Gene detail

Gene detail information of Glyur002556s00036570

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04790.1	7.00E-158	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_006582247.1	0	PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X1 [Glycine max]
Swissprot	tr\|Q6NQ81\|PP304_ARATH	0	Pentatricopeptide repeat-containing protein At4g04790, mitochondrial (Precursor)
trEMBL	tr\|G7JF19\|G7JF19_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES89885.2}

Sequence

Transcript Sequence

>Glyur002556s00036570.1
ATTCATTCTAAAATTTGATCACTTGTGCACTCTTGGAAGAGTCTTGTGCTTTGTACGCCCTTCTTCACCACCTTATTCACATTCATCGTGTTCATTTTGTAGTACTCGGCTGGCTCTAGTCGCACACTCTTCCTTCTGTTGGGTTCCTTCCATTTTCCACTTTCAACGGTTCAACAACTCGACAAAGCAACACAAAACGCATTCGGAAGAACGCACAAACAAAATCAANTCTTCTTCACTACCTTGTTGCAGAGCTTCGATGCGCGCCCCCGCCGCCAGAAAACTCTGCACTCTCAGCTCCTATTTCCGTTCACACTTACACTTACACCGCAAAACATCACCATCTTCTTCTTCTTCTGAATTACCTCAACGCGATTCTGGTTTAGACTTGCTCCCCGCAGCCCTCAAATTCGATAGTGCTTCTCCCCCAGAGGATCCACCGGACGTTGATGATGTGGCTAATCAGCTTTCTTCTATATTGTACACTCCTCCGGTAAAAAAGCTTGATGANGAAGAAAAAAGGAAAAGATGGCTGGATATACCATGGTTACCAGACATTTCTAATGGTGAGATATCACATAAACGGAAGGAGGTATCTCGTGGGAGGAAAGGTAAATGGATTTTTAAATGCACAGGCGATGACCANTTTGACAGGTTACTTAAGAAGTGTGTGGAAAGACTAGGAACAAGTGCTACGGTTGAGGTGTTTGGCCACTTGGGTCGAGAAACAGGTCTGAAAGAGTTCAATACATTGATAAAATTGTGCATAAAGAAGGCTAGGGAAGCTGATNGTGAATACATTGCTATAGAAGAAATGAGTAAGGCTTTTCACCTTTTCAAGATAATGAGGGAATGTGGTTTCCAGATAGAGGAGCAAACGTATCAGCCGCTTCTTCAGTACATAGTTGACATGGGCATGNCTCAAGAGTTTCAACTTTTCTCCGATGTCATCAAAGCTGATAACCCCAGTTCAATTTCGCGATTGGGTTACTATGAGATGACTCTATGGATAAGAGTTACCAATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGATAGTGAAGACACTTCTGCTTTACGAGAAAGTTACTTATTGGCTCTNTGTGAAAGTGATCGAAAGACACAGATTTTGGATGTGTTGAAAAATATAGACATAAAAAAGCTTACATCTGCAGAATCTATAGCAACTATATTCCAATCGTTGGGAAGGTTACTGCTGGAATCTGATGCGGAGAATTTACTTTTGGATTTGAGAGCACATGATCATGATGCAGATAATATTTCAAACTTCATTGCTAGCTATGCTGTTAGCATTCCAAATTTAGCGGTTGAGGATATCATCTCAAAATTCCAGAATTTGCATGAACTATTGGAAGTTTTGCCTTCATCCTCATCGTATGTAAAGCTCATTTTGTATTGCTGTGGCTTACGCAAGGTGNACGTAGCTCTTGATATTGTTGATAAAATGTGTGAATCAGGCTTTACGTTGTCTTCTGAGGTGTTGCAATCCATCTTACAAATTTGTGAGGAAACTTATGATTATATTTTGTTTGAAGGTGCATACAAGATGGTTGATAACTTACGGGAAATGAATTTCGAACCTACGACAGCCATGTACAATGCTATAATGGCAGGATATTTTCGGGAGAAAAACATCAGTGGTGGGTTGAGGGTCCTCAAACACATGCAAGATGCCAAAGTAAAATGTGATTCACAGACTTACAGCTATTTGATTTGCAATTGTGAGACGGAAGAGGATATAAATAAGTATTATGAAGAACTGAACCAATCTGGAACCCCACCTACAAAACAAGTTTTTATGGCCTTTATTAATGCCTATGCAGCTTGTGGCAAATTGGAGAAGGCAAAACAGGTAGTTTTAGATCCACGCATACCATTGAAGAGCTTAAATGATATTAAGAGTGTCCTTGTCTCAGCTCTTGCATCGCACGGGCAATTGTCTGAGGCACTTCTTATATACGAGGAAATCAAGAAAGCTGGGCACAATTTGGAGCCAAAAGCTGTTATAAGTCTCATTGAGGAGTTGGTTCGATTAAGGGGAGAGTTGAAAGGGTTGCTTCTTCTACTTGAGGAATTGAGTGATCTAGACTATTGGGTTGATGGTTGCTTCAGGGTTATCAATTACTGTGTTCAGAACAATCATTTAAGTTCTGCTATCGTCTTGTTCAAGCAACTCAAGGAGAAGTTTGAAAACGATGAATTAGTAATGGAAGTTCTGTTTGATGCAGTATTTTCTATAATCGCGGCATCCGAGTCTGGACAATTACAGTTTGGGTTGGACTTGCTTTGGGCAATCAAGAATGAGCTTGGCCTTGTTCCCTCGCGGCAGTGTCTTGATTTTCTTCTAAGCACTTGTGCCAACGCAGGAGATTTGAATAATGCTCGTTTGATTTGGAGAGAATANGAGGTTGCTGGATTTCCTTACAATGTATTAAGTTACTTGAGGATGTATCAGGCACTTTTGGCATCAGGAGATCACAGATCTGCTAACCTTATGCTCAAGAAAATTNCAAGAGACGATACCGAGGTTTGTTCTGTCGTCTTAGCATGTCAAGAAACTTACTGTGATAACCTTAACTCTGTAGGAGGGAAGAAGAAACAGAAAGGAAAGAAAAAGATGGAAAAAGAAAAAGAGTGAGGCTTGATATTGAGTAGAAGTTCCATTGGTATAGGGTAGAGAGATCTGTTCCCACTTATTTTTATTTGGCTTAAGAAATGTGCTTCACAAAGGGTGATGCATTTTACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02556	20263	30531	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002556s00036570.1	PF13041.1	PPR_2	452	497	1.10E-08
Glyur002556s00036570.1	PF01535.15	PPR	524	543	1.1
Glyur002556s00036570.1	PF01535.15	PPR	560	585	0.013

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.510
SRR1783600	control	2.568
SRR1783602	moderate drought stress	2.358
SRR1811619	moderate drought stress	2.406

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.097
DRR006520	Root Summer glycyrrhizin high producing strain	4.100
DRR006521	Root Winter glycyrrhizin high producing strain	3.191
DRR006522	Root Winter glycyrrhizin high producing strain	3.085
DRR006523	Root Summer glycyrrhizin low producing strain	3.870
DRR006524	Root Summer glycyrrhizin low producing strain	3.913
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.036
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.021
SRR2868004	Drought Stress (root)	5.299
SRR2967015	Control (root)	4.674

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.924
SRR9715740	Leaf	0.873
SRR9715741	Leaf	0.951
SRR9715739	Root	0.457
SRR9715742	Root	1.924
SRR9715743	Root	1.456

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.303
SRR8749028	MeJA induced 9h	9.728
SRR8749029	MeJA induced 9h	6.662
SRR8749030	Uninduced	2.476
SRR8749031	Uninduced	1.799
SRR8749032	Uninduced	1.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.794
SRR8400027	Control - Root	6.424