Gene detail information of Glyur002556s00036569 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54750.1 | 1.00E-93 | Transport protein particle (TRAPP) component |
| NR | AFK41630.1 | 1.48E-123 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SMY8|I3SMY8_LOTJA | 6.00E-124 | Uncharacterized protein {ECO:0000313|EMBL:AFK41630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02556 | 15023 | 18605 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002556s00036569.1 | PF04051.11 | TRAPP | 36 | 184 | 3.90E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.813 |
| SRR1783600 | control | 18.660 |
| SRR1783602 | moderate drought stress | 12.971 |
| SRR1811619 | moderate drought stress | 12.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.368 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.332 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.095 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.124 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.072 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.026 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.410 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 75.867 |
| SRR2868004 | Drought Stress (root) | 57.159 |
| SRR2967015 | Control (root) | 56.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.060 |
| SRR9715740 | Leaf | 27.921 |
| SRR9715741 | Leaf | 31.030 |
| SRR9715739 | Root | 45.666 |
| SRR9715742 | Root | 44.351 |
| SRR9715743 | Root | 43.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 91.288 |
| SRR8749028 | MeJA induced 9h | 64.111 |
| SRR8749029 | MeJA induced 9h | 62.687 |
| SRR8749030 | Uninduced | 40.391 |
| SRR8749031 | Uninduced | 26.112 |
| SRR8749032 | Uninduced | 28.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 65.004 |
| SRR8400027 | Control - Root | 67.930 |