Gene detail

Gene detail information of Glyur002552s00034765.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68670.1	9.00E-56	myb-like transcription factor family protein
NR	XP_007153350.1	1.24E-170	hypothetical protein PHAVU_003G028000g [Phaseolus vulgaris]
Swissprot	tr\|Q9FGT7\|ARR18_ARATH	2.00E-12	Two-component response regulator ARR18
trEMBL	tr\|V7C5E6\|V7C5E6_PHAVU	5.00E-171	Uncharacterized protein {ECO:0000313\|EMBL:ESW25344.1}

Sequence

Transcript Sequence

>Glyur002552s00034765.1
GCCCCGTCTTCGATGTTTTTACCCTTGTTCTTCTCTTGTCCACCCTCCGATAACTTTCTCTCTCTAACCCGATCCTATTTTCTCTCTCCTCCGAGTTTATTCCGAATTTTGATTCTGCTTAGATCCCATATTCTCCATTGTTAGATCCGTTTTTCCTGTCCACGCTTGGACAAAACGCCATTTCCCCCTATATATTCTTCCTTACCCTTTTCCTCAGACTGTTTCTCTTCCTCACTTACCCGCAAAACTGAAACTCAATCACACAACAAAAAAGAAAGAAATAAGAAGAAGAGGAAAAAGCCCGGTTTGTTTCAATGCAATTCGAGGAGAAAATGCACCCCCAGAAGATGGGGTTTCGCGAGTACATCGAAGCATTGGAGGAAGAAAGGAAAAAAATCCAGGTTTTCACCAGAGAGCTTCCCCTTTCATTGGAGCTTGTAACGCAAGCCATTGAAGGGTGTAAGCAGCAGTTATCTGGAACGATGACGGAGTACAATTGGAATGGCCAATCAGAGTGTTCGGAACAGACAACAACAGAAGAAGGCCCTGTTTTTGAGGAGTTTATTCCCATAAAGAAAAGGGCATCCCCTGATTGTGACGAAGAAGAAGAAGAAGANGATGATGATGAAGACGACGATGAGCAACATTCATCACACAAGAAGAACAAGAACAACACTGATAAGAAGAAACCGGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCGAAATCCCTCCTACAAAAGAGGATGTGCCAAGGAAAGCAAATGTTGTGGAAGTGAAGAGAAGTGGTGGTGCGTTTCAGCCATTCCACAGAGAGGAAAGTGTTGCTGTTGTAGGAAAGGCCAATAACAATGAATCCAAATCACCAACTTCACCAACAACAGTACCTGCCACAAGCTCTACGGGACCAGTTAGGGACAATGTTGGAAGCAGCAAAAGAGAACAAGAGAAAGCTGGACAGAGGAAGCAGCGACGGTGCTGGTCACAGGAATTGCACAAGCGCTTCTTGCATGCACTTCAGCAACTTGGCGGTGCAGATTGTGAGTATCTCTCAGCACAACCAGTTCTGGCTGCTACGCCAAAACAGATCAGGGAGCTAATGAAAGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACCAGAAGAAGCCCCATGATGCATAACAATGCTAATTCACAAACAACTCCTTTGTTCCTCGTGGGGAACATTTTTGTTCAACCACCAGAGTATTGTGCAGCAGGGTCAGGGGAATTGACCACAGTTACCGCACCAACTGGAATCTATGCGCCCGTGGCTGCACATCCTCCACCTGTTCAGCACACATCATCAACTATCACAGTTGTGAAGCCACGGTTTAGGCAATTAGAGGTGTCTGACCAATCACATTGTGAAGATCAGAGGGGTAATCACAGTGAAGGTGCTGTTGTTCATTCAAACTCCCCTGCCTCTTCATCCTCAACTCACACCCCCACAACTTCACATTTTCAAGGATGCTGTAAATAAATTTTTGTAACCATGTTGTAGTGGAAAAGTCCTCTTCTTTCTGTGACATTGTTGTTCTCTTCTGACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02552	25113	27551	-

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like
EAR motif-containing Proteins	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002552s00034765.1	PF00249.26	Myb_DNA-binding	220	281	2.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.980
SRR1783600	control	18.063
SRR1783602	moderate drought stress	55.473
SRR1811619	moderate drought stress	55.978

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.321
DRR006520	Root Summer glycyrrhizin high producing strain	15.423
DRR006521	Root Winter glycyrrhizin high producing strain	18.530
DRR006522	Root Winter glycyrrhizin high producing strain	18.300
DRR006523	Root Summer glycyrrhizin low producing strain	8.660
DRR006524	Root Summer glycyrrhizin low producing strain	8.902
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.394
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.393

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.572
SRR2868004	Drought Stress (root)	12.678
SRR2967015	Control (root)	17.791

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.052
SRR9715740	Leaf	7.003
SRR9715741	Leaf	7.452
SRR9715739	Root	2.647
SRR9715742	Root	14.875
SRR9715743	Root	10.146

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.609
SRR8749028	MeJA induced 9h	18.244
SRR8749029	MeJA induced 9h	13.950
SRR8749030	Uninduced	19.046
SRR8749031	Uninduced	40.499
SRR8749032	Uninduced	20.278

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.148
SRR8400027	Control - Root	26.164