Gene detail information of Glyur002547s00040582.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13280.1 | 4.00E-62 | allene oxide cyclase 4 |
| NR | KHN47545.1 | 3.32E-130 | Allene oxide cyclase 4, chloroplastic [Glycine soja] |
| Swissprot | tr|Q93ZC5|AOC4_ARATH | 3.00E-87 | Allene oxide cyclase 4, chloroplastic (Precursor) |
| trEMBL | tr|I1KWQ3|I1KWQ3_SOYBN | 2.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G28750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02547 | 28313 | 29552 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10525 | AOC | EC:5.3.99.6 | alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002547s00040582.1 | PF06351.6 | Allene_ox_cyc | 43 | 218 | 5.40E-102 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.255 |
| SRR1783600 | control | 4.257 |
| SRR1783602 | moderate drought stress | 1.511 |
| SRR1811619 | moderate drought stress | 1.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.461 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.995 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.754 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.702 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.657 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.762 |
| SRR2868004 | Drought Stress (root) | 40.236 |
| SRR2967015 | Control (root) | 9.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.394 |
| SRR9715740 | Leaf | 2.049 |
| SRR9715741 | Leaf | 3.880 |
| SRR9715739 | Root | 13.587 |
| SRR9715742 | Root | 26.696 |
| SRR9715743 | Root | 22.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.193 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.322 |
| SRR8749031 | Uninduced | 0.208 |
| SRR8749032 | Uninduced | 0.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.675 |
| SRR8400027 | Control - Root | 10.645 |