Gene detail information of Glyur002540s00038281 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56510.1 | 5.00E-20 | Disease resistance protein (TIR-NBS-LRR class) |
| NR | XP_003627902.1 | 7.40E-54 | Resistance protein [Medicago truncatula] |
| Swissprot | tr|O82500|Y4117_ARATH | 9.00E-22 | Putative disease resistance protein At4g11170 |
| trEMBL | tr|G7LGT8|G7LGT8_MEDTR | 3.00E-54 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:AET02378.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02540 | 17354 | 21892 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002540s00038281.1 | PF01582.15 | TIR | 100 | 166 | 1.10E-13 |
| Glyur002540s00038281.1 | PF00931.17 | NB-ARC | 205 | 318 | 8.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.067 |
| SRR1783600 | control | 17.088 |
| SRR1783602 | moderate drought stress | 12.960 |
| SRR1811619 | moderate drought stress | 13.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.255 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.676 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.058 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.758 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.251 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.955 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.357 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.002 |
| SRR2868004 | Drought Stress (root) | 23.764 |
| SRR2967015 | Control (root) | 21.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.071 |
| SRR9715740 | Leaf | 8.379 |
| SRR9715741 | Leaf | 8.714 |
| SRR9715739 | Root | 5.074 |
| SRR9715742 | Root | 17.339 |
| SRR9715743 | Root | 15.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.581 |
| SRR8749028 | MeJA induced 9h | 10.679 |
| SRR8749029 | MeJA induced 9h | 5.452 |
| SRR8749030 | Uninduced | 3.424 |
| SRR8749031 | Uninduced | 1.723 |
| SRR8749032 | Uninduced | 2.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.272 |
| SRR8400027 | Control - Root | 25.770 |