Gene detail information of Glyur002538s00029061 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17220.1 | 9.00E-36 | Protein kinase superfamily protein |
| NR | XP_007136021.1 | 2.57E-51 | hypothetical protein PHAVU_009G011400g [Phaseolus vulgaris] |
| COG | YP_003954688.1 | 1.00E-09 | Ser/Thr protein kinase [Stigmatella aurantiaca DW4/3-1] |
| Swissprot | tr|P27450|CX32_ARATH | 4.00E-42 | Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor) |
| trEMBL | tr|V7ARS8|V7ARS8_PHAVU | 1.00E-51 | Uncharacterized protein {ECO:0000313|EMBL:ESW08015.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02538 | 37890 | 38346 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.2.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002538s00029061.1 | PF00069.20 | Pkinase | 5 | 85 | 5.60E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.712 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.933 |
| SRR2868004 | Drought Stress (root) | 2.362 |
| SRR2967015 | Control (root) | 1.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.180 |
| SRR9715740 | Leaf | 0.184 |
| SRR9715741 | Leaf | 3.975 |
| SRR9715739 | Root | 0.088 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.298 |
| SRR8749028 | MeJA induced 9h | 3.254 |
| SRR8749029 | MeJA induced 9h | 0.640 |
| SRR8749030 | Uninduced | 8.224 |
| SRR8749031 | Uninduced | 1.366 |
| SRR8749032 | Uninduced | 3.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.128 |
| SRR8400027 | Control - Root | 0.204 |