Gene detail

Gene detail information of Glyur002538s00029059

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G42470.1	Patched family protein
NR	KHN33799.1	Niemann-Pick C1 protein, partial [Glycine soja]
trEMBL	tr\|K7KHM4\|K7KHM4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G01901.1}

Sequence

Transcript Sequence

>Glyur002538s00029059.1
ATGCGGTTCATACTTCATATCTTGCAGGTTTGCTTAATTCTATGTTTAGTAGCAGCAGACAATTTGTCTGCAAGGCTTCTTTTGACACCCAATGCCAAAACACCGGGGGAAAGGCATTCTGAGGATTATTGTGCAATGTATGATATTTGTGGAAAGCGCATTGATGGTAAAGTAGTGAACTGTCCATATGGTTCCCCGGCTGTGAAGCCAGATGACTTGCTTTCATCAAAGATCCAAAGTTTGTGTCCAACAATTANAGGGAACGTTTGTTGTACAGAAGCTCAGTTTGACACATTAAGGACGCAAGTTCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCGGCATGCTTAAGAAATTTTTTGAATCTGTTCTGCGAGCTTACATGCTCTCCGAATCAGAGCTTATTTATCAATGTGACTTCAGTTGACAAGGTTGGTGGTAATTTGACAGTGGGTGGGATTGATTATTTTGTAAGTGATGCTTTTGGTGAAGGGTTATATGAGTCCTGCAAGGATGTAAAGTTTGGCACCATGAATTCTCGAGCAATGCAATTTATTGGTGGCGGTGCTCAAAATTTTAAAGATTGGTTTGCTTTTATTGGTAAAAAAGCACCCCCTTATGGTCTTGGTTCACCATATGCAATTATGTTCCAGCCAAATGCAACCAAGTCATCTGGGATGAAACCTATGAATGTTTCAACTTATTCATGCGGTGATATATCCCTTGGCTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCTAATTCAGCTTCAACTACCACCCATAAGAGGGATTCCTGCTCCTTGAAAATTGGGACTTTAATGGTGAAATGTGTTGACTTGATTTTAGCAATCTTATACATCATAATGATATGTGTGTTCTTGGGTTGGGGATTGTATCATCGAATAAGGGAAAGAAAGCCTGCATATAGAACGAAATCAGTGTCCAATGTCATTAGTGGTGGCGTGCAATATTCTCGTAATCAGGAGAAGGAGGAGAACCTAACAATGCAGCAGATGATTGAAGATGGACAAAACAGAAATGGAGTTCGGCTCTCAGCTGTGCAAGGATACATGTCAAATTTTTACAGGAAATATGGATCATATGTAGCTAGAAATCCAATTACAGTCTTGGCTTCATCTTTGGCTATAGTTATTCTACTTTGTCTAGGTCTAATCCGATTCAAGGTTGAGACACGGCCTGCGAAGCTCTGGGTAGGACGTGGGAGTAAAGCAGCAGAAGAAAAGCAGTTTTTTGATAGCCATCTTGCTCCATTTTACAGAATTGAACAGCTCATATTGGCAACAGTTCCAGATCATACGAATAGTACATCACCAAGAATTGTTTCAGAGGACAACATTAGGTTTCTGTTTGAAATACAAAAGAAGGTTGATGCAATTCGTGCTAATCATTCTGGCTTGATGGTATCTCTCCAAGACATTTGTATGAAGCCACTAGACAAAGANTGTGCCACTCAAAGTGTCCTGCAGTACTTCAAAATGGACCCCAAAATTTTTGACAATTATGGCGGAGTTGAGCATCTCAGTTACTGTTTTGAGCATTATTCCTCAGCAGATCGATGTATGAGTGCATTTAAAGGTCCTGTTGACCCAAGCACCGTATTAGGAGGTTTTTCTGGGAGTGACTATTCTGGGGCATCAGCATTTATCGTAACTTATCCAGTAAATAATGCTGTTGATGAAGAAGCTAATGAAACTGCAAAAGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTGTTACCAATGGCACAATCAAGAAATTTGACACTTGCTTTTTCATCTGAAAGCTCTATTGAGGAAGAGTTGAAAAGAGAAAGTACAGCAGACGCTATTACTATATTGGTTAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGAGATATACCCCATCCTTCTTCTTTCTATATTTCATCTAAGGTATTGCTCGGTCTTTCGGGAGTAATTCTTGTCATGCTGTCTGTCCTTGGATCTGTTGGAATTTTTAGTGCACTTGGCGTAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTGAAAAGGCAACAGCAGGAGTTGCCTTTAGAAGTACGAATAAGCAATGCACTTGTGGAAGTAGGACCATCAATAACATTGGCTAGTTTATCAGAGGTTTTAGCATTTGCAGTTGGAAGCTTTATTTCCATGCCTGCATGTCGTGTCTTCTCCATGTTTGCAGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCATTTGTAGCTCTGATAGTTCTTGACTCTTTGCGAGCAGAGGATAAGAGAGTTGATTGTTTTCCATGCATAAAAGTTCATTCTTTGCATGCGGACCCTGATAAAGGCATTGGACAAAGAAAACCTGGTTTATTGGCTCGATATATGAAGGAGGTTCATGCTCCTATTCTAAGTATTTGGGGAGTAAAAATAGTTGTTATTGCTATTTTTGTGGGATTTTCATTGGCTAGCATTGCATTGAGCACTAGAATTGAACCTGGATTAGAGCAGGAGATTGTTCTTCCCCGAGACTCATATCTTCAGGGGTATTTCAATAATGTTTCAGATTATCTCAGAATTGGACCACCTTTGTATTTTGTTGTAAAGAACTATAACTACAGCTCAGAATCAACTCATACAAATCAGCTTTGCTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAGAGCGGCCCTAGTACCAGACACAAGTTATATTGCCAAACCAGCNGCCTCTTGGCTCGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGAAAGTTCACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGATGNCTCTTGTGTTTCAGTTGGAGCATGTAAAGATTGTACAACGTGTTTCCGTCACTCAGATCTCCATAATGATCGTCCTTCTACAGCACAATTTAGGGAGAAACTGCCATGGTTTCTTAGTGCTTTACCATCTGCTGATTGTGCAAAAGGTGGTCATGGGGCTTACACCAGCAGTGTTGAACTGAAAGGCTATGACANTGGCATTATTCAAGCATCTTCATTCCGTACATATCATACCCCACTCAACAAGCAGATTGACTATGTTAATTCCATGAGGGCCGCTCGAGAGTTCAGTTCAAGGGTTTCTGATTCTTTAAAGATTGAGATCTTCCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTAATATATGGAAGACTGCACTGGTCAACCTTGCAATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACATGCAGTTTATGGAGTTCAGCAATCATTTTGTTGGTGTTGGCAATGATTGTTGTTGATCTTATGGGTGTGATGGCCATTCTGAATATCCAGTTGAATGCCGTTTCGGTGGTCAACCTCATTATGTCAGTGGGCATTGCTGTCGAGTTTTGTGTGAATATGACTCATTCTTTCACTGTAACAAGTGGAGACAAAGATCAACGTGTTAAGGAGGCTCTAGGTACAATGGGTGCTTCAGTCTTCAGTGGTATCACACTAACAAAGTTGGTTGGAGTTATTGTTCTTTGCTTCTCGAGAACAGAAGTTTTTGTGATGTACTTGTCGCTAGTACTTCTTGGTTTTTTGCATGGACTCGTTTTCTTGCCGGTGGTATTGAGCATCTTTGGTCCACCTTCAAGATGTACAGTTACTGAGCAAGGAGAAGANCGTTCATCAACTTCTTCGTAACTATTGACCTAGGCATTGGAATTTGGATGATGGGTCGTCCACAAGTAGTTGAGAAGCATCTGTAAAGTATAAAATGTTTTAGGCGGTAAAAGAAGATAGGAATAGAAGTACACCAATTTTGACATATTCGCTTCGCTCCTAAACTTAAGCATCATATGACTCTTTTGTATCCATTTAATGATCTCTTATTTGTAAGGCTAAGGTAAAAGTTAAAGAAAAACAAATTAAAATGATAGGATTGTGGAAGAAAAAATCTATAATATTTATTTGTGTAATTATTACAGTTAAATATTTAGCGTATATCTAGTGTAATCAGTACAATTGTTTGTATTTAGTTATNTTTTCTTGTATTTTTTTATTTTTTGGTCAAACTTTTCTTGTATTTTTTATTGATAATATTTATTCGTAGGCTCGTAGTTTCCATATGTCTCAGAGTATAGTGGGTTAGGAATAGCAGGCTCTTGACGAACC

Protein Sequence

>Glyur002538s00029059.1
MRFILHILQVCLILCLVAADNLSARLLLTPNAKTPGERHSEDYCAMYDICGKRIDGKVVNCPYGSPAVKPDDLLSSKIQSLCPTIXGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVDKVGGNLTVGGIDYFVSDAFGEGLYESCKDVKFGTMNSRAMQFIGGGAQNFKDWFAFIGKKAPPYGLGSPYAIMFQPNATKSSGMKPMNVSTYSCGDISLGCSCGDCPSSSVCSNSASTTTHKRDSCSLKIGTLMVKCVDLILAILYIIMICVFLGWGLYHRIRERKPAYRTKSVSNVISGGVQYSRNQEKEENLTMQQMIEDGQNRNGVRLSAVQGYMSNFYRKYGSYVARNPITVLASSLAIVILLCLGLIRFKVETRPAKLWVGRGSKAAEEKQFFDSHLAPFYRIEQLILATVPDHTNSTSPRIVSEDNIRFLFEIQKKVDAIRANHSGLMVSLQDICMKPLDKXCATQSVLQYFKMDPKIFDNYGGVEHLSYCFEHYSSADRCMSAFKGPVDPSTVLGGFSGSDYSGASAFIVTYPVNNAVDEEANETAKAVAWEKTFIQLVKDELLPMAQSRNLTLAFSSESSIEEELKRESTADAITILVSYLVMFAYISLTLGDIPHPSSFYISSKVLLGLSGVILVMLSVLGSVGIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQQELPLEVRISNALVEVGPSITLASLSEVLAFAVGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVHSLHADPDKGIGQRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVGFSLASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSDYLRIGPPLYFVVKNYNYSSESTHTNQLCSISQCNSDSLLNEIARAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGDXSCVSVGACKDCTTCFRHSDLHNDRPSTAQFREKLPWFLSALPSADCAKGGHGAYTSSVELKGYDXGIIQASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNAVSVVNLIMSVGIAVEFCVNMTHSFTVTSGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCTVTEQGEXRSSTSS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02538	12058	25906	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030301 cholesterol transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0008158 hedgehog receptor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002538s00029059.1	PF02460.13	Patched	442	901	4.40E-55
Glyur002538s00029059.1	PF02460.13	Patched	1051	1261	7.60E-28
Glyur002538s00029059.2	PF02460.13	Patched	442	901	4.30E-55
Glyur002538s00029059.2	PF02460.13	Patched	1051	1237	5.70E-21
Glyur002538s00029059.3	PF02460.13	Patched	442	901	3.90E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.180
SRR1783600	control	29.168
SRR1783602	moderate drought stress	23.576
SRR1811619	moderate drought stress	23.579

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.926
DRR006520	Root Summer glycyrrhizin high producing strain	13.782
DRR006521	Root Winter glycyrrhizin high producing strain	5.692
DRR006522	Root Winter glycyrrhizin high producing strain	5.406
DRR006523	Root Summer glycyrrhizin low producing strain	31.517
DRR006524	Root Summer glycyrrhizin low producing strain	31.255
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.475
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.492

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.452
SRR2868004	Drought Stress (root)	31.216
SRR2967015	Control (root)	22.016

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.369
SRR9715740	Leaf	26.500
SRR9715741	Leaf	26.571
SRR9715739	Root	4.884
SRR9715742	Root	28.558
SRR9715743	Root	26.080

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.362
SRR8749028	MeJA induced 9h	41.824
SRR8749029	MeJA induced 9h	23.983
SRR8749030	Uninduced	9.430
SRR8749031	Uninduced	4.933
SRR8749032	Uninduced	9.332

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.400
SRR8400027	Control - Root	34.321