Gene detail

Gene detail information of Glyur002536s00036352.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	5.00E-120	Leucine-rich repeat protein kinase family protein
NR	AES75305.2	0	LRR receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	2.00E-50	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	6.00E-151	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7KI96\|G7KI96_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES75305.2}

Sequence

Transcript Sequence

>Glyur002536s00036352.1
ATGAAGCCATCTTGGTCTATATTTCCTCCCCTGCTCCTTCTCTGTTCTTTGAACTCACTTTGGTTTGGCCCAAACCCAACTGCCTCAGCATCAGGAACCGAGACTGACCATTTGTCACTACTCAAATTCAAGGAAGCTATATCCANTGACCCATATGGAGTCTTAGATTCTTGGAACGGTTCTACCCACTTCTGCAAGTGGCATGGAATCACATGCAGCCCCATGCATCAAAGGGTTACAGAGTTGAACCTACAAGGATCTAATTTGCATGGATCCATATCTCCCCANGTTGGCAATCTCTCTTTCCTGACAAACTTCAATCTCATGAACAACAGCTTCTATGGAGTAATCCCACAAGAATTGTGTCATTTAGTACAACTACAGCAACTTTNTCTCAACAATAACTCGTTGGTTGGGGAAATTCCCACAAACTTGACAAGTTTCTCTGATCTCAAACTCTTGGAGTTGTCAGGAAACAAGCTGGTTGGAAGAATACCAACTGAGATTGGCTCTCTAAGAAAGCTCCAAGGAATATTCATTAGACGAAACAATTTAACAGGAGAAATTCCACCATCTGTAGGGAATCTTTCATCCCTTATAGATCTTCATTTGCGCACCAATAACTTGGAGGGAAATATTCCACAAGAGATATGCCACTTGAAAAACCTGTCAACAATACAAGTGNGTGCAAACAAACTATCTGGTGAACTTCCTTTTTGTCTTTACAACNTGTCATCTCTCACTCTAATCTTTGTTGCNCTGAACCAATTCAGTGGCTCTCTTCCACCCAACATGTTTCACACCNTTCCCAATCTCCAAACCCTTTTCATCGGTGGGAATCAAATCTCGGGTCCAATCCCAACTTCCATCACAAATGCATCTGTCCTTCATNNATTTGATATCACTCAAAACCAATTCGAGGGACAAGTCCCAAGTCTTGGGAAGCTTAAAGATCTTCAGNTCCTTAGTTTGGCTCTGAACAAACTAGGTGGCAACTCAACTAAAGATTTGGAGTTTNTAGAATCATTGACAAATTGTAGTAAGATGAATATGGTCGATATATCCAGCAATAGTTTTGAGGGTCATTTACCAAATTCCTTGGGTAATATGTCCAATCAATTCAATAAACTATATCTTGGGGGTAATTATATATCAGGACAAATTCCNGTAGGATTAGGAAATCTAAATAGCTTATATCTCTTGAGCATGGAAGACAACTATTTTGAAGGGATGATTCCAACTACTTTTGGGAAGTTTCAGAAGATGCAAGTGTTAGGATTGAGTGGAAACCAGTTTACCAACCGGAGGCATCTTTCAAAATGCAAGCGGCTGCATCTACCGCCATGCCCTATCAAAGGTATGAAACCTGCAAAACACCATAAGTTTAGGTTGATAGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATGGTGTTAGTTATGCTAACTATCTATTGGGTGAGGAAAAGAAANAAGAAACCATCTTCTGATTCACCAACAATTGANCAGCTAGCAAAGGTTTCATACCAAGACCTACATCANGGAACCGATGGGTTCTCTGCTACAAACTTGATTGGATCAGGAAGCTTTGGTTCTGTGTACAAAGGAAATCTTGTGTCAGAAGACAAAGTTGTTGCCGTAAAGGTCTTGAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCCGAATGTAATGCACTGAAAAATATTAGGCATCGAAATTTGGTTAAGATTTTAACATGTTGTTCCAGTACTGATTACAAAGGTCAAGAATTTAAAGCTCTGATTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGCTGCATCCAAGGACAGGAAGTGTGGAGGAGCTTCCTAAAGCATTGGACCTTAATCAAAGGTTAAATGTCATTATCGATGTTGCTTCTGCATTACATTATCTGCATCATGAATGTGACCAATTGGTCCTTCATTGTGATCTGAAGCCAAGCAATGTCCTGCTTGACGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATCGACGGTACCTCTCATAAGGAAACTAGTGGAAGTACAATTGGAATAAAAGGGACTATTGGCTATGCTCCACCAGAGTATGGATTGGGTTCTCAGGTGACCACATATGGTGACATGTATAGCTTTGGGATGCTTATGTTGGAAATGATTACTGGAAGAAGACCCACAGATGAAATGTTTGAAGATGGTCAAAATCTACATAGGTTTGTTTTGGACCCATATCTTGTACCAAGAGATGAAGAAGCAACAATAGAGTATGGAAATAATGGGAATCTTACTCCAACCGCAGAGAAGTGCATAGTTTCACTTTTAAGCGTTGGACTTGCTTGTTCACTGGAATCACCGAAAGAAAGAATGAATATTGTGGATGTGTTCACTCATGAGTAATTAAAGCTTAAACAAATTTCCGCAGTCATTTGGGAAAGGACGTGCATGCAGTTTAANCCATAGGTGCAAAATTATTATAAATTTCCTTCCAGTTCTAGCAATTTGAGCACATCAATCCATCCTCTATGTAACATCTATCATATGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02536	8322	11746	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002536s00036352.1	PF08263.7	LRRNT_2	36	73	1.70E-10
Glyur002536s00036352.1	PF00069.20	Pkinase	522	750	1.30E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.077
SRR1783600	control	0.065
SRR1783602	moderate drought stress	0.103
SRR1811619	moderate drought stress	0.102

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.288
DRR006520	Root Summer glycyrrhizin high producing strain	0.313
DRR006521	Root Winter glycyrrhizin high producing strain	0.370
DRR006522	Root Winter glycyrrhizin high producing strain	0.355
DRR006523	Root Summer glycyrrhizin low producing strain	1.262
DRR006524	Root Summer glycyrrhizin low producing strain	1.202
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.419
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.310

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.016
SRR2868004	Drought Stress (root)	0.150
SRR2967015	Control (root)	0.109

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.162
SRR9715740	Leaf	13.872
SRR9715741	Leaf	6.686
SRR9715739	Root	0.015
SRR9715742	Root	0.010
SRR9715743	Root	0.049

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.071
SRR8400027	Control - Root	0.039