Gene detail information of Glyur002533s00039897 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33140.1 | 1.00E-86 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | XP_003595388.1 | 2.23E-163 | hypothetical protein MTR_2g044900 [Medicago truncatula] |
| trEMBL | tr|A2Q3Z1|A2Q3Z1_MEDTR | 8.00E-164 | Tac7077, putative {ECO:0000313|EMBL:ABN08341.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02533 | 28600 | 33530 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002533s00039897.1 | PF06941.7 | NT5C | 118 | 309 | 4.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.296 |
| SRR1783600 | control | 7.523 |
| SRR1783602 | moderate drought stress | 5.492 |
| SRR1811619 | moderate drought stress | 5.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.331 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.282 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.685 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.445 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.087 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.153 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.013 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.619 |
| SRR2868004 | Drought Stress (root) | 6.487 |
| SRR2967015 | Control (root) | 6.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.770 |
| SRR9715740 | Leaf | 2.868 |
| SRR9715741 | Leaf | 3.109 |
| SRR9715739 | Root | 1.476 |
| SRR9715742 | Root | 4.802 |
| SRR9715743 | Root | 3.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.355 |
| SRR8749028 | MeJA induced 9h | 6.619 |
| SRR8749029 | MeJA induced 9h | 5.083 |
| SRR8749030 | Uninduced | 4.154 |
| SRR8749031 | Uninduced | 3.266 |
| SRR8749032 | Uninduced | 4.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.798 |
| SRR8400027 | Control - Root | 14.937 |