Gene detail

Gene detail information of Glyur002521s00040799

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50740.1	2.00E-50	Heavy metal transport/detoxification superfamily protein
NR	KEH21012.1	3.45E-121	heavy metal-associated domain protein [Medicago truncatula]
Swissprot	tr\|Q9SZN7\|HIP26_ARATH	4.00E-10	Heavy metal-associated isoprenylated plant protein 26 (Precursor)
trEMBL	tr\|A0A072TUA8\|A0A072TUA8_MEDTR	1.00E-121	Heavy metal-associated domain protein {ECO:0000313\|EMBL:KEH21012.1}

Sequence

Transcript Sequence

>Glyur002521s00040799.1
CTCAGGTAAGGGTAACCGACCGAAGCTAAAGCTTGCCCTCTCTTCTCTTATAATAATATATAAGATAGAGAAACAAAGACCCTAGCTAGCTAACACTAGTGCAGAAATAAAAAGACCGAAATTTTACGGCAAAAAAAAAGTAGCAGCAGCAGCAGCATCACTACCAACCAAGCTTACCTATCTCCTCAGAATCTCTCTGAGCTACTTGAAGCCTTGAAGCCTTGAGTTGAGTCCCACTAAACCAATGGGAGAGGAAGTAAAGAAACCAGAGGAAAACAAAGTGGAGGAGAAAAAAACAGAGGAACCCAAGAAGGAAGAAGCTAAAGAGGAGGAAGCAAAGAAACCGGAGAAACCGGCGGAAGAGAAAAAGGCGGAGGAATCAAAAGGTGGCAAGGATCAACCTGCGCCTCCGCCAGAGATTGTGCTTAAAGTGTTCATGCATTGCGAAGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCCGAGGATTCCCAGGGGTTGAAGATGTGGTGACTGATTGCAAGTCTCACAAGGTGGTGGTTAAGGGAGAGAAAGCAGATCCACTGAAGGTTCTAGAGAGAGTACAGAGGAAGAGCCATAGACAGGTTGAGCTTCTTTCTCCGATCCCAAAGCCNCCGTCAGAGGAGGACAAAAAACCGGAAGAGAAAGAAAAGCCCAAGCCAGAGGAGAAGAAAGAAGAGCCTCCTCAGGTTACCACAGTTGTTCTGAAAGTTCACATGCATTGCGAGGCTTGTTCGCAGGAAATCAAGAGACGCATTGAGAGAATTAAAGGAGTGGAATCAGCAGAACCGGATCTGAAGAACTCTCTGGTGAGCGTGANGGGAGTGATTGAAACGGACAAGTTGGTGGAATACGTGTACAAGAGGACAGGGAAACAGGCAGTGATAGTGAAACAAGAGCCAGAGAAGAAAGAGGAAGCAAAAGAAGGAGCAGCAAAAGAGGAGAAGAAAGGTGAGGAAGGTGGTGACAAAGATCAGAAAGGAGGTGGTGGTGGTGGTGAAGGAGAGGGGGAGAACAACAAGGAGAAGAAAGAAGGAGGAGGAGGAGGAGATCAGGCCACAGCAGGTGAGGGAGGTGCAGAAGAAACCAAGGTGGTGGAACTGAAAAAGAATGAGTACTATTACAACCCACCAAGGTATGGAATGGAGTTCTATGCATATCCTGGGCCAGCATACCCACCCCAGATCTTCAGTGANGAGAACCCCAATGCCTGCTCTGTCATGTAAAAATTCAGGAATGTCAAGGGTAATATTGGAATTTGGGAGAAAGAACTATCTATGCGAGGTGATAGCCCTATCCTGGGTTAGATGTGCCCTCTGTACTTTTCCTGCAATATATAAAAAAGTATAATCTACAGATAAGCTGTAGAATTTTGTAACCCTTGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02521	26297	28341	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002521s00040799.1	PF00403.21	HMA	61	112	2.10E-12
Glyur002521s00040799.1	PF00403.21	HMA	159	214	3.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	50.216
SRR1783600	control	50.891
SRR1783602	moderate drought stress	115.775
SRR1811619	moderate drought stress	116.810

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	369.889
DRR006520	Root Summer glycyrrhizin high producing strain	362.627
DRR006521	Root Winter glycyrrhizin high producing strain	453.067
DRR006522	Root Winter glycyrrhizin high producing strain	443.284
DRR006523	Root Summer glycyrrhizin low producing strain	223.563
DRR006524	Root Summer glycyrrhizin low producing strain	226.259
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.571
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.759

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.473
SRR2868004	Drought Stress (root)	16.820
SRR2967015	Control (root)	18.649

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.581
SRR9715740	Leaf	1.474
SRR9715741	Leaf	2.595
SRR9715739	Root	0.647
SRR9715742	Root	36.273
SRR9715743	Root	31.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.983
SRR8749028	MeJA induced 9h	22.825
SRR8749029	MeJA induced 9h	32.806
SRR8749030	Uninduced	19.836
SRR8749031	Uninduced	9.668
SRR8749032	Uninduced	65.947

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.729
SRR8400027	Control - Root	37.521