Gene detail information of Glyur002520s00037981 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67740.1 | 3.00E-20 | photosystem II BY |
| NR | XP_003538579.1 | 4.27E-70 | PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Glycine max] |
| Swissprot | tr|P80470|PSBY_SPIOL | 3.00E-57 | Photosystem II protein psbY-2, chloroplastic (Precursor) |
| trEMBL | tr|I1LNE1|I1LNE1_SOYBN | 2.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G37580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02520 | 11461 | 12078 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002520s00037981.1 | PF06298.6 | PsbY | 94 | 126 | 1.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.281 |
| SRR1783600 | control | 20.211 |
| SRR1783602 | moderate drought stress | 32.069 |
| SRR1811619 | moderate drought stress | 32.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.425 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.853 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.338 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 90.848 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 91.220 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 955.401 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 943.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.155 |
| SRR2868004 | Drought Stress (root) | 23.805 |
| SRR2967015 | Control (root) | 14.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 353.038 |
| SRR9715740 | Leaf | 299.130 |
| SRR9715741 | Leaf | 257.286 |
| SRR9715739 | Root | 7.228 |
| SRR9715742 | Root | 7.743 |
| SRR9715743 | Root | 8.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.170 |
| SRR8749028 | MeJA induced 9h | 24.635 |
| SRR8749029 | MeJA induced 9h | 8.387 |
| SRR8749030 | Uninduced | 16.891 |
| SRR8749031 | Uninduced | 4.702 |
| SRR8749032 | Uninduced | 8.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.526 |
| SRR8400027 | Control - Root | 20.499 |