Gene detail information of Glyur002515s00041699 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11300.1 | 9.00E-88 | protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding |
| NR | KEH22677.1 | 0 | S-locus lectin kinase family protein [Medicago truncatula] |
| Swissprot | tr|Q9SXB4|Y1130_ARATH | 2.00E-101 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 (Precursor) |
| trEMBL | tr|A0A072TZ10|A0A072TZ10_MEDTR | 0 | S-locus lectin kinase family protein {ECO:0000313|EMBL:KEH22677.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02515 | 27321 | 31573 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002515s00041699.1 | PF01453.19 | B_lectin | 112 | 218 | 1.60E-28 |
| Glyur002515s00041699.1 | PF00954.15 | S_locus_glycop | 244 | 354 | 4.90E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.995 |
| SRR1783600 | control | 1.137 |
| SRR1783602 | moderate drought stress | 0.589 |
| SRR1811619 | moderate drought stress | 0.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.701 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.476 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.155 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.209 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.367 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.522 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.966 |
| SRR9715740 | Leaf | 26.962 |
| SRR9715741 | Leaf | 33.288 |
| SRR9715739 | Root | 0.510 |
| SRR9715742 | Root | 2.262 |
| SRR9715743 | Root | 1.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.453 |
| SRR8749028 | MeJA induced 9h | 3.052 |
| SRR8749029 | MeJA induced 9h | 0.877 |
| SRR8749030 | Uninduced | 2.292 |
| SRR8749031 | Uninduced | 1.545 |
| SRR8749032 | Uninduced | 1.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.369 |
| SRR8400027 | Control - Root | 3.279 |