Gene detail

Gene detail information of Glyur002514s00041947.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22840.1	3.00E-55	growth-regulating factor 1
NR	KEH39997.1	1.12E-176	growth-regulating factor [Medicago truncatula]
Swissprot	tr\|O81001\|GRF1_ARATH	4.00E-68	Growth-regulating factor 1
trEMBL	tr\|A0A072VDX1\|A0A072VDX1_MEDTR	4.00E-177	Growth-regulating factor {ECO:0000313\|EMBL:KEH39997.1}

Sequence

Transcript Sequence

>Glyur002514s00041947.1
TCTTCTTCTTCTTCCCGTTTTGGGGAGAGGGGTTTTGGCAAGTATTTGCACAGTATACAAAGAGGGTACCGAAGGAGAAATCTCCAAAATTTGATTGGTTCTGTTCTGTTCTATTCTGTACCCTCTTTCTCTAAAAATTTGTCTTTCCTTTTCCATTTCTTCCTCTTCTCTCACAAAAGAAAGTTGACTTGACTGTTGTTTTTTTCCCCTTCAAAATCATTATCTATTTTCTCTAAATGTTTCACACCCAACCCAAGTCTGCTGCTTCTGCCACTCCTTTTTTTCCTTGTTTCTTTTTAACCTCGCTCTGAAGCAAAGCAAGCAACTTTTTCTTCTTTTTCTCTTTTTAAATTCTCAATTTTTCTGTGTTTCTACCCTGTTTGTGCTTAGTTACCTTGTGGGGTATTAATATTAATGTAATTTCAATTGCAGGTTGGTACAGTAGTTCGGGAAGCAATAGCGTGGTGCATGGGGGTAATGGTGGTGGGAGAGGGCCATTCACANCGTCGCAGTGGATGGAGCTGGAACACCAGGCACTGATCTACAAGTACATCACTGCAAATGTGCCCATTCCTTCCAATTTGCTCATCCCCATCCAAAAAGCACTTGATTCTGCTGGCCTCTACAACTTCTCTGCCGGTCTCCTCAGACCCAATGCCTTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACAACGATCCGGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGATGCTCAAGAGATGCCGTTGTGGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCATGTGGAAACTGGGGCCACCACCACCACCACCACCACCACTCCTCCTCCAAATGGTTCAAAGCTCAATGCTGCTTCTTCTTCTACCATTATGGTGCCCGGAAATAGCCCAACCAGCAGCCTTACATTTGCAGAACCCAAAAATATGCACAACCTTCTTGCACCAAATAGCAATACTTCCGCTGCCAACACCACCAANAGGATTTTTCATAATCTTTTCATGCGTTACTGTTTCGTACAATATAGCAATTTTGTTCCCATGTTAGTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACAACGATCCGGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGATGCTCGAGAGATGCCGTTGTGGATCAGAAGTATTGCGAGCGGCACATGAATAGAGGACGCCATCGTTCAAGAAAGCATGTGGAAACTGGGGCCACCACCACCACTCCTCCTCCAAATGGTTCAAAGCTCAATGCTGCTTCTTCTTCTACCATTATGGTGCCCGGAAATAGCCCAACCAGCAGCCTTACATTTGCAGAACCCAAAAATATGCACAACCTTCTTGCACCAAATAGCAATACTTCCGCTGCCAACACCACCAANAGGATGTTCNTGAATAACAAGGAGAATAACAATGCAAGTGAGGGGATGCAGGATGGCCCTGCACTTCCAATGCTGCCTCCCACTCTTGAGTTGAAACCAAAGGAAAGCCATCCCTTTATGATTCACAAACAGGAAATTAATCNTTATGATGAATCATCATCCTCAAGGAGTAAAAATGAGTTTGGACTTGTCACTTGTGATTCCCTGCTTAACCCTTCACAAAAAAGCTCCACCTTACTTGGCAGCAGAAGCTATGGTTCTTCACAGAACCCCGCTAACCGAGACACGGGGTCCCAACATTCCCTTAGGCATTTCATTGACGACAGTCCCAAAACACAGTCCGATCATTGCTCCGGCAGTGTTTCGTGGCCGGAGCTCGACANGCAGTCAGATAGGACACAGCTATCAATTTCCCTCCCATTGACATCCTCAGATTTCATGTCATTCACTACTTCCTCACCCACCAACGAAAAGCTCACATTGTCACCTCTCAGGCTATCAAGGGAGTTAGACCCAATTCAAATGGGTTTGGGTGTGGGAAGTGCTCTCAACAATGAATCAAACACTACTAGTACTACTACTAGGCAAGCTAATTGGATCCCAATTACTTGGGAGAGTTCCATGGGTGGTCCTCTTGGAGAGGTTCTTAATCTTAGTAGTAACAACTACTACAACAATGCAGCAAGTGATGATCACTGTGCCAATAANTCCTCCTCTTCTTCTTTGAACCTGATGAGTGATGGGTGGGACAATAGTCCTCCAATGGGGTCATCTCCAACTGGGGTCCTTCAGAAGACAACATTTGGATCACTCTCCAATAGCAGTGCTGGGAGCAGTCCAAGAGGGACAGATAACAAGACTCGAGAATTGTGCAATGACCTCCTTGGATGAATGTTTCTTCCTACATACCCGCCGCCTTGTGAAGAAGACAATGGAGGGAGGGAGAAAAGAACAGAACTTTGTTCATGACTTTAATTATCAGTTCAGTTTTTATATATATATATGGTAATCTCAGAATTTGGAAAAGATGTGTTTTTTTCTGTAGTAGTGATTAGTGATTGCCCTTGCTTGGCCCTCATAATTTGGGTGTGTAGGTTCTTTCTTGGTTTGCTTGACTTTTTTTTTTCACTTTGTATCTGTTTCATGTGCTGTGACTGTGAGAGGGTGTTTTGGCAAGTTTGTATGTAACAACAGTAAGTAAGTGATGTTGGTTGGAGTTGGGTCAACACAAGTGGGGACTCTGATTGCATGACGTTACCGTAATTATTAAATTGAGAGTTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02514	8414	12867	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005524 ATP binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002514s00041947.1	PF08880.6	QLQ	1	29	3.80E-11
Glyur002514s00041947.1	PF08879.5	WRC	63	107	5.20E-22
Glyur002514s00041947.1	PF08879.5	WRC	206	250	5.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.127
SRR1783600	control	3.122
SRR1783602	moderate drought stress	4.302
SRR1811619	moderate drought stress	4.395

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.750
DRR006520	Root Summer glycyrrhizin high producing strain	1.693
DRR006521	Root Winter glycyrrhizin high producing strain	1.303
DRR006522	Root Winter glycyrrhizin high producing strain	1.265
DRR006523	Root Summer glycyrrhizin low producing strain	1.062
DRR006524	Root Summer glycyrrhizin low producing strain	1.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.683
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.717

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.461
SRR2868004	Drought Stress (root)	2.577
SRR2967015	Control (root)	3.617

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.597
SRR9715740	Leaf	2.617
SRR9715741	Leaf	3.071
SRR9715739	Root	0.464
SRR9715742	Root	1.526
SRR9715743	Root	0.859

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.923
SRR8749028	MeJA induced 9h	0.660
SRR8749029	MeJA induced 9h	0.402
SRR8749030	Uninduced	0.361
SRR8749031	Uninduced	0.169
SRR8749032	Uninduced	0.219

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.667
SRR8400027	Control - Root	3.700