Gene detail

Gene detail information of Glyur002512s00038137.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11820.2	2.00E-108	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
NR	XP_003620731.1	2.23E-148	Hydroxymethylglutaryl-CoA synthase [Medicago truncatula]
COG	YP_003957743.1	1.00E-20	hydroxymethylglutaryl-CoA synthase [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|P54873\|HMCS_ARATH	6.00E-133	Hydroxymethylglutaryl-CoA synthase
trEMBL	tr\|G7KQF5\|G7KQF5_MEDTR	8.00E-149	3-hydroxy-3-methylglutaryl coenzyme A synthase {ECO:0000313\|EMBL:AES76949.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02512	13318	20180	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01641	E2.3.3.10	EC:2.3.3.10	Butanoate metabolism	map00650
			Synthesis and degradation of ketone bodies	map00072
			Valine, leucine and isoleucine degradation	map00280
			Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0008299 isoprenoid biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0004421 hydroxymethylglutaryl-CoA synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002512s00038137.1	PF01154.12	HMG_CoA_synt_N	52	152	5.90E-49
Glyur002512s00038137.1	PF08540.5	HMG_CoA_synt_C	153	205	9.90E-20

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.017
SRR1783600	control	0.006
SRR1783602	moderate drought stress	0.126
SRR1811619	moderate drought stress	0.143

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.052
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.161

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.001
SRR2868004	Drought Stress (root)	0.011
SRR2967015	Control (root)	0.066

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.413
SRR9715740	Leaf	0.084
SRR9715741	Leaf	0.127
SRR9715739	Root	0.048
SRR9715742	Root	0.015
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.038
SRR8749028	MeJA induced 9h	0.089
SRR8749029	MeJA induced 9h	0.042
SRR8749030	Uninduced	0.151
SRR8749031	Uninduced	0.102
SRR8749032	Uninduced	0.042

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.441
SRR8400027	Control - Root	0.091