Gene detail

Gene detail information of Glyur002512s00038136

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G51890.1	2.00E-111	Peroxidase superfamily protein
NR	AFK46112.1	1.15E-166	unknown [Lotus japonicus]
Swissprot	tr\|Q9LT91\|PER66_ARATH	1.00E-146	Peroxidase 66 (Precursor)
trEMBL	tr\|I3T0S0\|I3T0S0_LOTJA	4.00E-167	Uncharacterized protein {ECO:0000313\|EMBL:AFK46112.1}

Sequence

Transcript Sequence

>Glyur002512s00038136.1
CTAATCACTTTCCTATTCCTTATTATCTGTTTCACTTTAAACCAAATGGCATCAAAATGCATTTTTCCAATCATCATTTTCCTCTTCTTGACAGTATCTGAAGCAGAGCTTAATCCACACTACTATGGACAAAACATGTCCTCAATTGGAGAAAATCATTTCAGAGACGGTTCTCAATGCTTCTAAATATGACCCCAAAAGTCCCAGCTCGTATATTGAGGATGTTCTTCCATGACTGTTTCATAAGGGGTTGTGATGCATCAATATTGCTGGATTCAACTTCTAGAAACCAGGCAGAGAAAGATGGCCCACCTAATGTCTCTGTTCGATCATTCTATGTCATAGATGATGTTAAAGCCAAGCTCGAGAAAGCTTGTCCACACACTGTTTCATGTGCTGATATAATCGCTATTGCAGCTAGAGATGTGGTAACCATGTCTGGAGGTCCATATTGGAATGTGCAAAAAGGAAGAAAAGATGGAAGGGTGTCAAAGGCATCAGACACAATCAACCTACCAGCTCCAACCTCTAATGTGAACCAACTCATTCAAAGCTTTGCAAAGAGAGGTTTAGGAATCAAGGACATGGTCACTCTCTCTGGTGCTCACACCCTTGGNTTCTCACATTGCTCTTCCTTTGTATCTAGGATTCACAACTTCAGTTCTCTCCATGACNTTGACCCAAGTTTGAACACTGAGTTTGCACTTAGCCTTAGAAATAAGTGCCCAAAGTTACAAAATAATAATGCAAATAACCCCAATGCAGGACAGTTTTTGGATTCAACAGCATCAGTGTTTGATAATGACTANTACAAAAGACTTTTGGTGGGAAAAGGGGTGTTTTCCTCTGATCAATCACTTGTTGGTGATTATAGAACTAGATGGGTAGTTGAAGCATTTGCCAAAGATCAAAACTTGTTCTTCAAGGAGTTTGTGGATTCAATGTTGAAACTTGGGAATGTTGGGGTCTCTGAGATTGGAGAAGTGAGGCTTAATTGCAGGGTTGTGAATTGATGGGAAAGAGTGAGATCATTGAGAAGAGAGATATACTGTGACTAAATGCATGTTTGGTTTTTAGTTGAATAATTGCAAAAGTATATTTGAATCCAAAATAACTATAGAGTTACTTTTTGGACAAATATACTTTTAAATTCAAACATACGTTTGCAACTAAAATCAAATATGTTTTAAGTCTCAAGTCTTAAGCCTGCTTTTTTNCCCCTTCTTGTCACCACTTTCTTTATTCAAAACAATGTCATAATGGTGTTGTAAAATTACTGCTATAATGTTCAAATAAAAAAAAAAAGTTTACTCCTACATGGCTACATCTGAATAATACTCCTGCTTGTTAGCTTCTTATTCTGGACTTTTCCTTTTTGAAAGAGAAACAGAGAAGAGGGGAGGAAGTGGGGCTAGTTTATGTAAGAAAAAGAAATGTATCGATTTTTAGGTGTAGAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02512	6870	9878	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002512s00038136.1	PF00141.18	peroxidase	7	244	1.70E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.904
SRR1783600	control	0.718
SRR1783602	moderate drought stress	0.666
SRR1811619	moderate drought stress	0.682

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.789
DRR006520	Root Summer glycyrrhizin high producing strain	9.393
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	25.007
DRR006524	Root Summer glycyrrhizin low producing strain	24.436
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.951
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.766

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.710
SRR2868004	Drought Stress (root)	7.054
SRR2967015	Control (root)	6.568

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.501
SRR9715740	Leaf	0.043
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	8.725
SRR9715743	Root	8.171

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.641
SRR8400027	Control - Root	5.365