Gene detail information of Glyur002511s00035434 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13080.1 | 0 | multidrug resistance-associated protein 3 |
| NR | XP_006586123.1 | 0 | PREDICTED: ABC transporter C family member 3-like isoform X3 [Glycine max] |
| COG | NP_969385.1 | 3.00E-153 | multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100] |
| Swissprot | tr|Q9LK64|AB3C_ARATH | 0 | ABC transporter C family member 3 |
| trEMBL | tr|I1KYH1|I1KYH1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02511 | 23808 | 37001 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002511s00035434.1 | PF00664.18 | ABC_membrane | 316 | 582 | 5.80E-24 |
| Glyur002511s00035434.1 | PF00005.22 | ABC_tran | 648 | 782 | 3.00E-19 |
| Glyur002511s00035434.1 | PF00664.18 | ABC_membrane | 946 | 1202 | 6.00E-23 |
| Glyur002511s00035434.1 | PF00005.22 | ABC_tran | 1278 | 1350 | 2.40E-13 |
| Glyur002511s00035434.1 | PF00664.18 | ABC_membrane | 1780 | 2047 | 1.80E-20 |
| Glyur002511s00035434.1 | PF00005.22 | ABC_tran | 2112 | 2246 | 1.60E-20 |
| Glyur002511s00035434.1 | PF00664.18 | ABC_membrane | 2409 | 2668 | 3.40E-24 |
| Glyur002511s00035434.1 | PF00005.22 | ABC_tran | 2742 | 2889 | 8.50E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.586 |
| SRR1783600 | control | 2.602 |
| SRR1783602 | moderate drought stress | 2.912 |
| SRR1811619 | moderate drought stress | 2.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.395 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.318 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.911 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.887 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.560 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.257 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.311 |
| SRR2868004 | Drought Stress (root) | 1.651 |
| SRR2967015 | Control (root) | 1.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.385 |
| SRR9715740 | Leaf | 2.203 |
| SRR9715741 | Leaf | 0.737 |
| SRR9715739 | Root | 0.213 |
| SRR9715742 | Root | 0.538 |
| SRR9715743 | Root | 0.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.201 |
| SRR8749028 | MeJA induced 9h | 3.445 |
| SRR8749029 | MeJA induced 9h | 1.413 |
| SRR8749030 | Uninduced | 0.431 |
| SRR8749031 | Uninduced | 0.273 |
| SRR8749032 | Uninduced | 0.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.272 |
| SRR8400027 | Control - Root | 2.233 |