Gene detail information of Glyur002511s00035434


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13080.10multidrug resistance-associated protein 3
NRXP_006586123.10PREDICTED: ABC transporter C family member 3-like isoform X3 [Glycine max]
COGNP_969385.13.00E-153multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
Swissprottr|Q9LK64|AB3C_ARATH0ABC transporter C family member 3
trEMBLtr|I1KYH1|I1KYH1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43810.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold025112380837001+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002511s00035434.1PF00664.18ABC_membrane3165825.80E-24
Glyur002511s00035434.1PF00005.22ABC_tran6487823.00E-19
Glyur002511s00035434.1PF00664.18ABC_membrane94612026.00E-23
Glyur002511s00035434.1PF00005.22ABC_tran127813502.40E-13
Glyur002511s00035434.1PF00664.18ABC_membrane178020471.80E-20
Glyur002511s00035434.1PF00005.22ABC_tran211222461.60E-20
Glyur002511s00035434.1PF00664.18ABC_membrane240926683.40E-24
Glyur002511s00035434.1PF00005.22ABC_tran274228898.50E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.586
SRR1783600control2.602
SRR1783602moderate drought stress2.912
SRR1811619moderate drought stress2.920

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.395
DRR006520Root Summer glycyrrhizin high producing strain2.318
DRR006521Root Winter glycyrrhizin high producing strain0.911
DRR006522Root Winter glycyrrhizin high producing strain0.887
DRR006523Root Summer glycyrrhizin low producing strain2.670
DRR006524Root Summer glycyrrhizin low producing strain2.560
DRR006525Leaf Summer glycyrrhizin high producing strain2.257
DRR006526Leaf Summer glycyrrhizin high producing strain2.255

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)1.311
SRR2868004Drought Stress (root)1.651
SRR2967015Control (root)1.294

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf1.385
SRR9715740Leaf2.203
SRR9715741Leaf0.737
SRR9715739Root0.213
SRR9715742Root0.538
SRR9715743Root0.540

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.201
SRR8749028MeJA induced 9h3.445
SRR8749029MeJA induced 9h1.413
SRR8749030Uninduced0.431
SRR8749031Uninduced0.273
SRR8749032Uninduced0.330

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root3.272
SRR8400027Control - Root2.233