Gene detail

Gene detail information of Glyur002502s00041162

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68710.1	0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	XP_007153308.1	0	hypothetical protein PHAVU_003G024200g [Phaseolus vulgaris]
COG	YP_002316143.1	1.00E-18	cation transport ATPase [Anoxybacillus flavithermus WK1]
Swissprot	tr\|Q9SX33\|ALA9_ARATH	0	Putative phospholipid-transporting ATPase 9
trEMBL	tr\|V7C558\|V7C558_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25302.1}

Sequence

Transcript Sequence

>Glyur002502s00041162.1
ATGAGGGGTGAAAAAAGGAGGAGGAAGAAGCTGCATCTNAGCAAGATCTACTCATTCGCATGTGGGAGAAACTCATTTGAAGGGGATCACTCACAGATTGGAGGGAGAGGATATTCAAGGGTGGTGTTCTGCAATGAGCCAGAGAGGTTTGAGGCTGAAGGGATTAAGAGCAACTATGCAGATAACAAAGTGAGGTCCACAAAGTATACTCTTGCTACTTTCTTGCCAAAGTCACTGTTTGAACAGTTTAGGAGGGTGGCTAACTTCTATTTCTTGGTCACTGGATCCTTGGCATTCACAAAGCTTGCTCCTTATACANCTGTCAGTGCCATCCTTCCTTTGATTGTTGTTATTGGGGCAACTATGGTCAAAGAGGGTATTGAAGATATGCGCCGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTAAGGTGCATAAAGGGCATGGAACTTTTGAATATACTGAGTGGAAGAATCTGAAGGTGGGGCATATAGTGAAGATAATGAAGGATGAATTCTTCCCCGCAGACCTGCTACTTCTTTCATCCAGTTATGAGGATGCATTCTGCTATGTTGAGACCATGAACTTGGATGGGGAGACAAATTTGAAGCTGAAACAAGGATTGGAAGCTACTTCTACTTTACACGAGGACTCCGAGTTCAGTGATTTTAAAGCTACAGTCAAATGTGAAGACCCAAATGCAAATCTGTATTCATTTGTTGGGAGCATGGAGTTTGGGGAGCAGCAATATCCCCTTTCTCCTCAGCAGCTTCTTCTGAGAGACTCTAAACTTCGTAACACGGATTACATATTTGGAGCCGTCATCTTCACCGGTCATGACACAAAGGTTATTCAAAACTCTACCGATCCCCCTTCAAAGAGAAGCAAGGTTGAGAAGAAGATGGATAAAATCATCTACTTCTTGTTTTGTATTTTGTTTCTGATGGCATTTGTTGGATCTATTTTCTTTGGCATCATAACTAAAGATGACTTGGACGACAATGGGGTGATGAAAAGATGGTATCTAAGACCAGATGATTCTACCATTTTCTTTGATCCTAAAAGAGCTCCTGCTGCTGCTATATACCATTTTTTGACAGCCTTAATGTTATATGGCTTCTTCATTCCCATCTCATTGTATGTATCAANAGAAATTGTCAAAGTCCTTCAAAGCATGTTCATCAATCAGGATATCCATATGTACTATGCTGAAGCAGACAAACCGGCCCATGCCTGTACTTCGAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACATGCAACTCAATGGAGTTCATCAAATGTTCCATTGCTGGGACAGCTTATGGCCTTGGTGTTACTGAGGTTGAGAGGTCCATGAATAGAAGAGATGGTTCTCCTNTGATCAGTGACATCAGGGAATCTCCCGATAGAAATTCACCCGTCAAAGGTTTTAACTTCACAGATGAAAGGANAATGAATGGAAAGTGGGTTCGTGAGCCTTATGCAGATGTTCTCCAGAAATTTTTCCACTTATTGGCAATCTGTCATACAGCCATACCAGAAGTGGATGAAGACACAGGAAATGTCTCATATGAGGCCGAATCACCAGATGAGGCAGCATTTGTCATTGCAGCGAGAGAAATTGGTTTTGAATTCTATAAAAGGACTCAGACTAGTTTATCGATGTATGAACTGGATCCGGTTTCTGGTGACAAAGTTGAAAGGAATTACACACTTCTCAATGTTTTGGAATTCAATAGCTCAAGGAAACGAATGTCAGTGATAGTGAAGGATGAAGAAGGGAGAATTTTGCTACTGTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGGACGGGAGAGAGTTTGAAGAGAAAACATTGGAACATGTGCAAGAATATGCTGATGCAGGTCTTAGAACCCTGGTACTGGCGTATCGTGAACTTGATGAAGAGCAATACGAGGAGTTTGATAATAAATTTTCTCAAGCAAGAAATTCAGTTAATGCGGATCGGGAAACATTGATAGAGGAATTATCAGATAAGATCGAGAGGAATCTAATCCTTCTCGGTGCCACTGCCGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGCATTGACAAGCTTGCACAAGCTGGAATTAAGATATGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATTGGTTTGCTTAGACAAGGAATGAAGCAGCTTATAATTCATTTGGATTCTCCAGAAATTCAAGTATTGGAGAAGGCCGGAGACAAGATGGCTATTGCCAAGGCTTCGAGGGAAAGTGTCCGCCAACAGATATCGGAAGGCGGTCAACAGCTTACTTCCTCCAGAGGAACCTCTCAGCAAGCATATGCTCTAATCATTGATGGAAAATCACTTGCTTATGCTTTGGAGGATAATATGAAGGACATGTTTCTAGAGCTTGCAATTCGTTGCGCATCTGTTATCTGCTGCCGATCGTCACCAAAGCAGAAAGCACTGGTCACTAGACTGGTAAAATCTGGAACTGGTAAAACTACGTTAGCTATTGGTGATGGAGCTAATGATGTTGGGATGCTTCAAGAAGCAGATATAGGGGTTGGAATCAGTGGTGTTGAAGGAATGCAGGCCGTTATGTCTAGTGATATCGCAATCGCACAGTTTCGTTATTTGGAAAGATTACTTCTTGTACACGGACATTGGTGTTACAGGAGGATCTCATCAATGATATGCTACTTTTTCTACAAGAATATCGCATTTGGATTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAGCCAGCATACAATGACTGGTTTTTGTCTCTGTATAATGTCTTCTTTTCATCGCTTCCCGTGATTGCCCTCGGTGTCTTTGACCAGGATGTATCTGCTCGGTACTGTCTCAAATTTCCTATATTATATCAAGAAGGTGTACAAAATGTCCTATTCAGCTGGTGGCGTATCTTCCACTGGATGCTTAATGGCTTTATCAGTGCCATAATAATCTTCTTCTTCTGCGTGAAGGCAATGGAGATTCAGGCCTTTGACGAGGAGGGAAGAACTGCTGGGAGGGATATACTCGGAGCAATGATGTATACATGCGTGGTGTGGGTAGTGAACTTGCAGATGGCACTTGCCATAAGTTACTTCACCTTGATTCAACATGTCTTCATATGGGGATCCATTGCTATCTGGTATCTTTTCCTCGTGGCATACGGTGCGGTACCTTCGGGCATTTCGACAAATGCTTACAAAGTCTTCATCGAAACTCTTGCTCCGGCTCCTTCCTATTGGATTGTGACATTGTTTGTGGTGATCTCAACGCTCATACCACACTTCTCTTACTCAGCGCTGCAGATGCAGTTCTTTCCTTTGTATCACGAGATAGTACAATGGATAAGGTACCAGGGGATGACTAGTGATCCCGAGTTCTGCCATATGGTGCGGCAGGGATCATTGCGGCCAACCACCGTGGGTTCGACAGCTCGCTTAGCTGCTAAGACTAACAGCATTAGAGAGGATTCTTCTAACCATAGATAATATAATACACTTTTTGACATATGGAGTTTGTGTATAGCAGTTTGAGAATATATTTATTGTGGCTCCTCTCAGCCAGGAAGCTGTGTTGCTTACATCCATTTTTGTGGTTTGCCATGGCTCACACAAGCAACATTTGGCTGTGAAGTTGGATAGAAGAATAAAAAGTATGCCTGAGAGTTTTTGGCCATTTGAGGGCTGTATAGAGGTTAATTTGTAGTCTGCTTTTTGTACCAT

Protein Sequence

>Glyur002502s00041162.1
MRGEKRRRKKLHLSKIYSFACGRNSFEGDHSQIGGRGYSRVVFCNEPERFEAEGIKSNYADNKVRSTKYTLATFLPKSLFEQFRRVANFYFLVTGSLAFTKLAPYTXVSAILPLIVVIGATMVKEGIEDMRRKKQDIEVNNRRVKVHKGHGTFEYTEWKNLKVGHIVKIMKDEFFPADLLLLSSSYEDAFCYVETMNLDGETNLKLKQGLEATSTLHEDSEFSDFKATVKCEDPNANLYSFVGSMEFGEQQYPLSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNSTDPPSKRSKVEKKMDKIIYFLFCILFLMAFVGSIFFGIITKDDLDDNGVMKRWYLRPDDSTIFFDPKRAPAAAIYHFLTALMLYGFFIPISLYVSXEIVKVLQSMFINQDIHMYYAEADKPAHACTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTAYGLGVTEVERSMNRRDGSPXISDIRESPDRNSPVKGFNFTDERXMNGKWVREPYADVLQKFFHLLAICHTAIPEVDEDTGNVSYEAESPDEAAFVIAAREIGFEFYKRTQTSLSMYELDPVSGDKVERNYTLLNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLAKDGREFEEKTLEHVQEYADAGLRTLVLAYRELDEEQYEEFDNKFSQARNSVNADRETLIEELSDKIERNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGLLRQGMKQLIIHLDSPEIQVLEKAGDKMAIAKASRESVRQQISEGGQQLTSSRGTSQQAYALIIDGKSLAYALEDNMKDMFLELAIRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFLYEVYASFSGQPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCLKFPILYQEGVQNVLFSWWRIFHWMLNGFISAIIIFFFCVKAMEIQAFDEEGRTAGRDILGAMMYTCVVWVVNLQMALAISYFTLIQHVFIWGSIAIWYLFLVAYGAVPSGISTNAYKVFIETLAPAPSYWIVTLFVVISTLIPHFSYSALQMQFFPLYHEIVQWIRYQGMTSDPEFCHMVRQGSLRPTTVGSTARLAAKTNSIREDSSNHR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02502	17365	24229	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015914 phospholipid transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0004012 phospholipid-translocating ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002502s00041162.1	PF00122.15	E1-E2_ATPase	117	392	2.90E-11
Glyur002502s00041162.1	PF12710.2	HAD	428	869	2.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.069
SRR1783600	control	1.067
SRR1783602	moderate drought stress	1.190
SRR1811619	moderate drought stress	1.141

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.829
DRR006520	Root Summer glycyrrhizin high producing strain	1.795
DRR006521	Root Winter glycyrrhizin high producing strain	1.346
DRR006522	Root Winter glycyrrhizin high producing strain	1.404
DRR006523	Root Summer glycyrrhizin low producing strain	2.400
DRR006524	Root Summer glycyrrhizin low producing strain	2.476
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.451
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.394

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.186
SRR2868004	Drought Stress (root)	17.264
SRR2967015	Control (root)	15.573

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.209
SRR9715740	Leaf	4.499
SRR9715741	Leaf	7.578
SRR9715739	Root	1.010
SRR9715742	Root	4.997
SRR9715743	Root	4.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.629
SRR8749028	MeJA induced 9h	9.114
SRR8749029	MeJA induced 9h	4.410
SRR8749030	Uninduced	18.305
SRR8749031	Uninduced	13.247
SRR8749032	Uninduced	6.231

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.938
SRR8400027	Control - Root	4.517