Gene detail

Gene detail information of Glyur002501s00037657

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60020.1	0	laccase 17
NR	XP_004492318.1	0	PREDICTED: laccase-17-like [Cicer arietinum]
COG	YP_003996662.1	3.00E-27	multicopper oxidase type 3 [Leadbetterella byssophila DSM 17132]
Swissprot	tr\|Q9FJD5\|LAC17_ARATH	0	Laccase-17 (Precursor)
trEMBL	tr\|A0A072U047\|A0A072U047_MEDTR	0	Laccase {ECO:0000256\|RuleBase:RU361119}

Sequence

Transcript Sequence

>Glyur002501s00037657.1
ACACCAACATTTTGTCCCATTCATTCCATCAACACAGTTCAAACTCAGAGAAACATTTTCAAGATCAACAATCTTTTCAGGAATTCAGAGAGAAACATGGGTGGTGTTTCCTTTCTTTCATCACTTAAAATCCCAGTGTTCTTTTTGTCATTGGTTAATTTTTGTATACTTGAGCTTGCATTGGCGGGAACTACCAGACACTACCGTTTTGATATAAGGCACCAAAATGTGACAAGGTTGTGCCATAGAAAGAGCATGGTGACAGTGAATGGCCAGTTTCCAGGACCTCGCATTGTAGCTAGGGAAGGCGACCGTCTTCTTATCAAAGTGGTTAACCATGTGNCAAACAACATCTCCATTCACTGGCATGGCATTCGACAGCTTCAATCCGGATGGGCTGATGGGCCAGCATATGTGACTCAATGCCCCATCCANACAGGTCAAAGCTATGTTTACAATTANACCATTAAAGGCCAGAGAGGCACACTCTTTTGGCATGCCCATATATCTTGGTTAAGAGCANCANTCTATGGTCCACTCATCATCCTTCCCAAGCACAATGATAAATATCCTTTTGCAAAACCCGACAAGGAAGTACCTATCATATTTGGAGAATGGTTCAATGCAGATCCTGAGGCAATCATAGCACAAGCCCTGCAAACCGGGGGAGGACCAAATGTCTCTGATGCCTACACAATTAATGGCCTTCCAGGGCCATTGNATAACTGCTCCAACAAAGATACTTTCAAGCTGAAGGTGAAGCCTGGGAAGACTTACTTGCTACGTTTGATTAATGCTGCCCTCAATGATGAGTTATTCTTCAGCATTGCTAATCACACCCTCACAGTTGTTGAAGCTGATGCAATTTATGTAAAGCCTTTTGTGACTAACACCATCCTTATTGCCCCTGGCCAAACCACTAATGTTCTTCTGAAGACCAANTCTCACTACCCCAATGCCACATTCTTAATGACAGCTAAACCATATGTGACTGGCCAAGGAACTTTTGACAACTCAACGGTTGCTGGTATACTAGAATATAAAATCCCTTCTAATACTCATCATTTAGCCACTTCACTGAAAAAGCTTCCACTCTTCAAACCTATACTCCCAGCACTTAATGACACTTCTTTTGCAACAAGTTTTTCCAACAAACTCCGTAGCCTTGCAAGTGCTCAGTTTCCAGCTAATGTTCCCCAGAAAGTTGATAAGCACTTTTTCTTNACAGTAGGCCTTGGTACTAATCCTTGCCAGCAAAACCAAACTTGTCAGGGACCCAATGGAACAATGTTTGCAGCATCAGTGAACAATGTGTCCTTCACACTCCCAACCACTGCACTTCTCCAAACCCACTTCTTTGGGCAATCCAATGGGGTTTACACCACTGACTTCCCAAAAAGTCCCTTGCATCCATTCAACTATACTGGCACCCCACCAAACAACACCATGGTGAGCAATGGGACAAAGGTTGTGGTTCTTCCGTTCAACACAAGTGTGGAGCTTGTCATGCAGGACACTAGCATTCTTGGAGTAGAAAGTCACCCTCTCCATTTGCATGGCTTTAACTTCTTTGTTGTAGGCCAAGGATTTGGTAACTTTGATCCAAATAAGGACCCTGCAAACTTCAATCTCATTGATCCTATTGAAAGGAACACAATTGGTGTTCCATCTGGNGGTTGGGTAGCTATAAGGTTCCTAGCAGATAATCCAGGGGTATGGTTCATGCATTGTCACTTGGAAGTCCATACAAGCTGGGGTCTTAAGATGGCTTGGGTTGTCTTGGATGGAAAGCTCCCAAATCAGAAGCTACTTCCTCCACCAGCTGATCTTCCCAAGTGCTAACTTCCACCTGAAATTGATTTGATTTGTTTCAACATTTTGGCCCCTTTTTGTAATTCAACACTGGGAAGTTGGTTTGCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02501	5666	8576	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002501s00037657.1	PF07732.10	Cu-oxidase_3	72	186	2.20E-40
Glyur002501s00037657.1	PF00394.17	Cu-oxidase	198	348	3.70E-41
Glyur002501s00037657.1	PF07731.9	Cu-oxidase_2	475	595	1.90E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.434
SRR1783600	control	0.436
SRR1783602	moderate drought stress	0.532
SRR1811619	moderate drought stress	0.508

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.427
DRR006520	Root Summer glycyrrhizin high producing strain	8.441
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	5.737
DRR006524	Root Summer glycyrrhizin low producing strain	5.687
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.663

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.196
SRR2868004	Drought Stress (root)	2.135
SRR2967015	Control (root)	3.584

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.049
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.567
SRR9715743	Root	1.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.126
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.040
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.588
SRR8400027	Control - Root	0.623