Gene detail

Gene detail information of Glyur002501s00037655

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04760.1	2.00E-56	vesicle-associated membrane protein 726
NR	KEH22817.1	2.31E-96	synaptobrevin-like protein [Medicago truncatula]
Swissprot	tr\|Q9MAS5\|VA726_ARATH	1.00E-80	Putative vesicle-associated membrane protein 726
trEMBL	tr\|A0A072TZG8\|A0A072TZG8_MEDTR	9.00E-97	Synaptobrevin-like protein {ECO:0000313\|EMBL:KEH22817.1}

Sequence

Transcript Sequence

>Glyur002501s00037655.1
AAAAAGTCGTTTGCTTGCATTATTGCATCACGTTATTGCTTACCTCGTATGTAATCACCATAATTACAATTCTCGTTCTAGAACGGAAGGGCCTCTGCTCTGCTGACTCTTCTTTCTCTGACCCCGTCCTTNAGCTATAGTTCTTTCAAATCAAAGTCCCTAAAAATCCCGTGGCATTTTTTCTGTAATAAAAAATCGCAACTAATTACGAACACGTCAAAAAATCAAACACGCTTTTGCATCCTTCTCCCTCAAAACTCTTGCGCGCAACCAACAATCAATCAAATCAAATCAAACCAGAATTCATTTTCCTTTTTCTTCTCTTTTTTCTTAGCTGAGTTTGTTTTCGGTTTTGGATGGGGCAACAATCGCTGATATACAGCTTCGTGGCGCGTGGGACGGTGATCGTGGCGGAGCACACCGACTTCAGCGGTAACTTCGCGGAGATAGCGTTGCAGTGCCTGCAGAGGCTCCCTGCATCAAACACAAAGTTCACCTACAACACCGACGGCCACACCTTCAACTACCTCGCCCACGATGGATTCAACTTAGACTCACATGATCTATTATTTTTAGCTTACTGCGTTGTGGCAGTGGAGTCTGTTGGTCGCCAGATTGCAATGGCCTTTCTTGAACGCATCAAGGAGGATTTCACCAAGAGATATGGTGGAGGAAAAGCTGCAACTGCCACAGCTAAAAGCTTAAACAAAGAATTCGGACCCAAGTTGAAGGAGCATATGCAATATTGTGTGGAACACCAAGAAGAGGTTAGCAAACTTGCACAAGTGAAAGCTCAGGTTCTTAATCGTCAAGTGAAGATTGATGTATTGATGGATAAATCTGAAAACCTTCACAATCAGGTGCTTTTATTTGTTGTCACACATGAACTTAATTTTATGGGAAATTGAACTGAAGATAATCTTTTGATCATATGCAGAGTTGCCTATATGATTGGTTGATTAATGTCAAGAGCTATAAATTAAAAACATGGAAGAATTTTTCTTAAATTGAAATGTCTACTAGCTGACATGTAAAATGTGTTCGTTATATACAGAGTTTTGTTCACCTAAACTAAAGTGCATTTTGAAATGTAGTAGATCACTTTGTTTGTCACTTGCAGCCATGTTCAAATATCTAGTTCTAAACTTCTAGTGATGAAAGTTTCACAAAATCACAAAACTATCATAAAAGACTCTGTGTTTATGGCTGTTATTCATGAATTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02501	727	3699	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002501s00037655.1	PF13774.1	Longin	32	121	7.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.648
SRR1783600	control	1.611
SRR1783602	moderate drought stress	2.289
SRR1811619	moderate drought stress	2.405

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.118
DRR006520	Root Summer glycyrrhizin high producing strain	2.042
DRR006521	Root Winter glycyrrhizin high producing strain	7.704
DRR006522	Root Winter glycyrrhizin high producing strain	7.129
DRR006523	Root Summer glycyrrhizin low producing strain	10.557
DRR006524	Root Summer glycyrrhizin low producing strain	10.887
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.264
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.236

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.256
SRR2868004	Drought Stress (root)	22.341
SRR2967015	Control (root)	8.303

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.356
SRR9715740	Leaf	10.476
SRR9715741	Leaf	30.577
SRR9715739	Root	3.918
SRR9715742	Root	2.487
SRR9715743	Root	3.655

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.254
SRR8749028	MeJA induced 9h	8.155
SRR8749029	MeJA induced 9h	14.361
SRR8749030	Uninduced	49.292
SRR8749031	Uninduced	107.697
SRR8749032	Uninduced	65.911

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.751
SRR8400027	Control - Root	6.294