Gene detail information of Glyur002488s00038927 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01680.1 | 2.00E-14 | |
| NR | ABV32453.1 | 1.44E-179 | forisome [Canavalia gladiata] |
| trEMBL | tr|A8C976|A8C976_CANGL | 5.00E-180 | Forisome {ECO:0000313|EMBL:ABV32453.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02488 | 28385 | 32473 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002488s00038927.1 | PF14577.1 | SEO_C | 179 | 359 | 2.90E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.885 |
| SRR1783600 | control | 1.817 |
| SRR1783602 | moderate drought stress | 1.236 |
| SRR1811619 | moderate drought stress | 1.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.302 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.664 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.009 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.319 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.739 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.428 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.214 |
| SRR2868004 | Drought Stress (root) | 9.163 |
| SRR2967015 | Control (root) | 11.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.496 |
| SRR9715740 | Leaf | 0.565 |
| SRR9715741 | Leaf | 0.783 |
| SRR9715739 | Root | 1.356 |
| SRR9715742 | Root | 3.169 |
| SRR9715743 | Root | 4.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.011 |
| SRR8749029 | MeJA induced 9h | 0.003 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.545 |
| SRR8400027 | Control - Root | 4.706 |