Gene detail information of Glyur002487s00036999 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11580.1 | 1.00E-127 | Regulator of chromosome condensation (RCC1) family protein |
| NR | KHN12959.1 | 0 | Putative E3 ubiquitin-protein ligase HERC4 [Glycine soja] |
| COG | YP_002462041.1 | 3.00E-29 | chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 3.00E-38 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|I1MA07|I1MA07_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G22700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02487 | 23949 | 26332 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002487s00036999.1 | PF00415.13 | RCC1 | 34 | 86 | 1.90E-13 |
| Glyur002487s00036999.1 | PF00415.13 | RCC1 | 165 | 214 | 1.10E-12 |
| Glyur002487s00036999.1 | PF00415.13 | RCC1 | 230 | 276 | 2.00E-09 |
| Glyur002487s00036999.1 | PF00415.13 | RCC1 | 344 | 373 | 6.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.603 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.569 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.158 |
| SRR2868004 | Drought Stress (root) | 3.071 |
| SRR2967015 | Control (root) | 3.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.161 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.088 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.273 |
| SRR8749028 | MeJA induced 9h | 26.808 |
| SRR8749029 | MeJA induced 9h | 2.792 |
| SRR8749030 | Uninduced | 33.587 |
| SRR8749031 | Uninduced | 62.328 |
| SRR8749032 | Uninduced | 46.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.276 |
| SRR8400027 | Control - Root | 0.110 |