Gene detail

Gene detail information of Glyur002481s00045214

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17540.1	7.00E-151	HXXXD-type acyl-transferase family protein
NR	ACJ85557.1	0	unknown [Medicago truncatula]
Swissprot	tr\|Q8GT20\|BEBT_TOBAC	0	Benzyl alcohol O-benzoyltransferase
trEMBL	tr\|B7FLC3\|B7FLC3_MEDTR	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACJ85557.1}

Sequence

Transcript Sequence

>Glyur002481s00045214.1
CATAGCTTTNGCTACCTTTCAAAGCCTTTAATTTTCCGCATTCCGTATTATGGCCCAATCTCTGGTATTCACAGTGCGTAGGCGTGACCCAGTGCTAGTGGCACCAGCAAAACCCACACCTCGTGAGGTGAAACTACTCTCAGACATTGATGACCAAGATGGGTTACGGTTCCAAATCCCAGTGATACAATTCTATCACCATGACCCATCATTGGCAGGGAAAGATCCTGTTGAGGTGATTAGAAAGGCAGTGGCGGAAACGCTTGTGTTTTACTATCCCTTTGCGGGTAGGTTGAGGGAAGGGTCTGGTCGGAAACTCATGGTGGATTGTACCGGTGAAGGTGTTCTGTTCATTGAGGCTGATGCTGACGTCACGCTTCAGCAATTTGGTGATGCTCTTCAGCCTCCGTTCCCTTGCTGGGAGGANCTCCTTTACGATGTCCCTGGCTCTGCTGGAATCCTTAACACTCCCCTGTTGCTTATTCAGGTAACACGGCTCAAGTGTGGTGGTTTCATTTTCGCTCTCCGGTTAAACCACACCATGGGCGATGCAGCCGGTTTGGTCCAATTCATGAGCACGGTGGGCGAAATGGCCCGCGAGATGGGTGAGCCATCGGTCCNACCAGTGTGGCACAGAGAGCTTCTCAATGCTCGGGACCCACCAAGAGTGACATGTACCCATCGCGAATACGAACAAGTCCCCGACACCAAGGGAACCATCGTCCCCTTAGACGACATGTCCCACCGCTCCTTCTTCTTTGGTCCCACCGAGGTAGCTGCAATTCGCGCTCTCCTCCCACCACACCAACGCCGACAATGCTCCAACTTCGATCTCCTCACCGCATGCCTCTGGCGTTGCCGCACCGTAGCATTGCAACCAGACCAAGATGAAGAGGTTCGCATAATCTGCATCGTCAATGCGCGATCTAAATTCGTCCCGCCGTTACCAAACGGTTACTACGGAAACGCCTTTGCGTTTCCCGTTGCGGTTACAACTGCAGGGAAGCTTCTTGAAAACCCGTTGGGGTATGCATTGGAGTTAGTTAGGAAGGCAAAGGCTGATGTGACACAAGAGTACATGCATTCGTTGGCGGATCTAATGGTCACCGAGGGACGGCCTCACTTTACTGTGGTGAGATCATACCTTGTTTCCGATGTGACGCGTGCTGGGTTCGGAGAGGTTGATTTTGGGTGGGGGAAGGCTGTTTATGGAGGGCCAGCTAAGGGAGGAGTTGGTGCCATACCTGGTGTGGCTAGCTTTTACATACCTTTTAAAAATGCTAAGGGGGAGGAAGGTTTGGTGATACCNGTTTGTTTACCATCTGAGGCCATGGAGAGGTTTGCCAAAGAGTTGAATAGCATGCTCAAGAACCATGCCCAACAACCTACTCAGGGTGGTCCAAAATCTAGTTTTATTGTTTCTGCGTTATAGTTTAAGAAAGAAAAAAAAACTTTGAATTTACTACTTGAGATTGGTGTGAGTATATATATATATATAGCATACATATTGCAATAGAAAAATCATATGAGAGTCTAAGCTAAATTAAGCATTTAGTATAATATCGTGAGCGAGTCTTTGGATGTCACTGTTTAAATTTTGTTTGCTTTATTATACTTTTCTGTCTTGATAATTATTTTGGTGCTTTGACCAAGCCTCTATATACTTCAGTTATATGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02481	8066	11867	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002481s00045214.1	PF02458.10	Transferase	8	437	3.10E-122

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.892
SRR1783600	control	2.720
SRR1783602	moderate drought stress	2.897
SRR1811619	moderate drought stress	2.762

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.528
DRR006520	Root Summer glycyrrhizin high producing strain	6.834
DRR006521	Root Winter glycyrrhizin high producing strain	0.132
DRR006522	Root Winter glycyrrhizin high producing strain	0.125
DRR006523	Root Summer glycyrrhizin low producing strain	26.335
DRR006524	Root Summer glycyrrhizin low producing strain	25.645
DRR006525	Leaf Summer glycyrrhizin high producing strain	60.175
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.994

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.892
SRR2868004	Drought Stress (root)	109.105
SRR2967015	Control (root)	70.412

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	131.687
SRR9715740	Leaf	62.002
SRR9715741	Leaf	85.335
SRR9715739	Root	13.068
SRR9715742	Root	31.342
SRR9715743	Root	29.077

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.690
SRR8749028	MeJA induced 9h	14.170
SRR8749029	MeJA induced 9h	12.827
SRR8749030	Uninduced	2.644
SRR8749031	Uninduced	0.634
SRR8749032	Uninduced	5.973

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.949
SRR8400027	Control - Root	28.948