Gene detail information of Glyur002478s00041716 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58070.1 | 3.00E-74 | temperature-induced lipocalin |
| NR | KDP38644.1 | 4.81E-103 | hypothetical protein JCGZ_03997 [Jatropha curcas] |
| COG | YP_003691903.1 | 2.00E-31 | Lipocalin family protein [Desulfurivibrio alkaliphilus AHT2] |
| trEMBL | tr|A0A067L3I0|A0A067L3I0_JATCU | 2.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:KDP38644.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02478 | 819 | 2713 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002478s00041716.1 | PF08212.7 | Lipocalin_2 | 13 | 159 | 1.40E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 185.076 |
| SRR1783600 | control | 185.123 |
| SRR1783602 | moderate drought stress | 324.079 |
| SRR1811619 | moderate drought stress | 322.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 116.923 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 114.779 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 541.267 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 529.553 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 196.918 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 196.885 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 116.257 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 113.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.017 |
| SRR2868004 | Drought Stress (root) | 36.769 |
| SRR2967015 | Control (root) | 42.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 138.668 |
| SRR9715740 | Leaf | 275.875 |
| SRR9715741 | Leaf | 204.872 |
| SRR9715739 | Root | 115.781 |
| SRR9715742 | Root | 130.146 |
| SRR9715743 | Root | 127.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.067 |
| SRR8749028 | MeJA induced 9h | 0.060 |
| SRR8749029 | MeJA induced 9h | 0.169 |
| SRR8749030 | Uninduced | 0.060 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 86.908 |
| SRR8400027 | Control - Root | 101.194 |