Gene detail

Gene detail information of Glyur002472s00037178

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22150.1	0	sulfate transporter 1;3
NR	XP_004490362.1	0	PREDICTED: sulfate transporter 1.3-like isoform X1 [Cicer arietinum]
COG	YP_006180043.1	7.00E-65	sulfate transporter family protein [Halobacillus halophilus DSM 2266]
Swissprot	tr\|Q9FEP7\|SUT13_ARATH	0	Sulfate transporter 1.3
trEMBL	tr\|G7KA24\|G7KA24_MEDTR	0	High affinity sulfate transporter {ECO:0000313\|EMBL:AES97926.1}

Sequence

Transcript Sequence

>Glyur002472s00037178.1
CTTTACAGCAGTCTTCCTGCTCAACAAGTCTTTAAAACTTCAACCAAGTGACCTTCACCCTTCTGTGAGCTTCCCCTCCCTCTCATTCAGTGAAAGTCATTGTTGATGTCCTCAATGGGTCATCCAACTGATGAAAATCTTGAAGCAAAAGAGATGGATGGGAGCAATTTGTCATCTTCACATGGCCAGGAGCCATACGTGCACAGGGTCGGAATTCCTCCAAGACAAAACCTCTTAAAGGAATTTCAATCCACTGTAAAAGAAACATTTTTTGCAGACGATCCTCTACGGTCCTTCAAGGATCAGACGAAATCCCGGAAGTTCATTCTGGGCATTGAAGCCATATTCCCCATACTTAGTTGGGGGAGAACTTATAGCCTCAAAAAGTTTAGAGGGGATCTTATTGCCGGTCTAACTATTGCAAGTCTCTGCATTCCTCAGGACATTGGATACTCAAAGCTTGCAAATTTGGCTCCACAGTATGGACTGTGTAAGACTCTTGTTGTCTCTGATCAACAGCTCAAGTTGCCTGTATTTTGTTGCCTTTTTGTTCTACTACCCTTTACAGACTCCAGCTTTGTTCCACCATTGATTTATGCTGTCATGGGTAGTTCTCGTGACATCGCAATAGGACCAGTTGCAGTGGTTTCTCTCTTGTTGGGGACTTTACTTCAGAGTGAGATTGATCCCAATACAAATCCAACAGACTATAGACGACTCGCTTTTACTGCCACTTTTTTTGCTGGGATTACACAGGCAACTCTTGGGGTTTTTAGGTTAGGATTTTTGATTGATTTCCTATCTCATGCTGCTATTGTTGGTTTTATGGGGGGAGCTGCCATCACAATTGCCCTTCAACAGCTTAAGGGTTTCCTTGGTATTGAAAAGTTCACAAAGAAAACTGATATCATCTCTGTGATGGATTCAGTATTCTCATCAGCCCATCATGGGTGGAACTGGCAAACTATAGTAATTGGAGCTACCTTCCTGGCTTTTCTTCTGTTTGCCAAGTATATTGGAAAGAAGAGCCAGAAATTCTTCTGGGTTCCAGCTATTGCCCCATTGATATCTGTTGTACTCTCCACTTTTTTTGTATACATAACCCGTGCAGACAAGCATGGTGTTGCAATTGTAAAACACATAGAGAAAGGGATCAATCCTTCATCTGTGAAGGAAATTTATTTCAGTGGTGATTACTTAGGGAAAGGTGTTAGAATTGGCATCGTGGCTGGCATGATAGCATTGACTGAAGCCATAGCAATTGGAAGAACATTTGCTTCTATGAAGGACTATCAATTGGATGGAAACAAAGAAATGATGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGTTATGTAGCAACTGTCTCTAATATTGTCATGTCCATTGTTGTGTTCTTAACCCTGCAATTCATCACACCTCTTTTCAAATACACTCCAAATGCCATTCTTGCTTCAATCATCATTTCTGCTGTCATCAACCTTGTAGACTATAAGGCAGCAATTTTGATATGGAAGATTGACAAATTTGACTTTGTTGCTTGCATGGGAGCATTCTTTGGGGTTGTTTTTGCCTCAGTTGAGATAGGACTTTTGATTGCTGTTTCCATATCCTTTGCAAAGATCCTATTACAAGTCACAAGGCCCAGAACTGCTATTCTGGGGAAGATCCCTGGGACAACTGTCTATAGAAACATCCAGCAATACCCAGAGGCCACAAGGGTTCCTGCCGTTACTGACATCGATACCAGTGGCATCCATGCCCTTGAAGAGTTATTTAGAAGTCTTCAGAAGAGAGATGTTCAGCTTGTTCTGGCAAATCCTGGCCCACTAGTGATAGACAAGCTCCACACATCAAACTTTGCTAACTTGCTCGGTGAGGACAAGATCTTCCTCACGGTTGCAGAGGCTGTTGCATACTGTTCTCCAAAGCTAGCCGAAGACCCTTGAAAAAATATATGATGGAAAAAAAAATTGATTATGCCATCTTTAGGATAGGAAAGATCAGAAATTGTGATGAAGAAATTAATGAAATGAGGGTAGGTAGAGAGAGACACACATGCGGCTTTTAGCTTGTGTTAATTAGCTGGTGAATGAAGAATTGAGGTGGTCACTAAAAAAGTTAGTAAGAGTGGCACTTTCTGCTGGTTAGTTCTGTGGGGTCCCTTTATTATTGTCTTATAAAATNAAAATAAAACATATAAAGGTGCGCTTTGTTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02472	8060	13515	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

cellular_component

GO:0005886 plasma membrane

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002472s00037178.1	PF13792.1	Sulfate_tra_GLY	81	133	1.10E-15
Glyur002472s00037178.1	PF13792.1	Sulfate_tra_GLY	156	188	5.60E-08
Glyur002472s00037178.1	PF00916.15	Sulfate_transp	220	424	7.70E-72
Glyur002472s00037178.1	PF01740.16	STAS	545	605	4.60E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.311
SRR1783600	control	1.254
SRR1783602	moderate drought stress	4.290
SRR1811619	moderate drought stress	4.317

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.806
DRR006520	Root Summer glycyrrhizin high producing strain	12.817
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	10.893
DRR006524	Root Summer glycyrrhizin low producing strain	10.764
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.279
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.827
SRR2868004	Drought Stress (root)	7.874
SRR2967015	Control (root)	3.691

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.210
SRR9715740	Leaf	2.320
SRR9715741	Leaf	3.301
SRR9715739	Root	1.831
SRR9715742	Root	32.297
SRR9715743	Root	26.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.129
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.131
SRR8749031	Uninduced	0.134
SRR8749032	Uninduced	0.034

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.172
SRR8400027	Control - Root	5.998