Gene detail information of Glyur002469s00034379 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 4.00E-15 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | KHN30249.1 | 2.20E-58 | TMV resistance protein N [Glycine soja] |
| COG | YP_001869376.1 | 4.00E-07 | hypothetical protein Npun_F6147 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|O23530|SNC1_ARATH | 1.00E-17 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
| trEMBL | tr|K7MWS1|K7MWS1_SOYBN | 3.00E-57 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G07700.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02469 | 12169 | 22472 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002469s00034379.1 | PF00931.17 | NB-ARC | 70 | 182 | 1.50E-15 |
| Glyur002469s00034379.2 | PF00931.17 | NB-ARC | 162 | 266 | 1.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.888 |
| SRR1783600 | control | 1.787 |
| SRR1783602 | moderate drought stress | 1.616 |
| SRR1811619 | moderate drought stress | 1.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.505 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.663 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.353 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.241 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.208 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.076 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.226 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.547 |
| SRR2868004 | Drought Stress (root) | 14.121 |
| SRR2967015 | Control (root) | 14.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.147 |
| SRR9715740 | Leaf | 0.934 |
| SRR9715741 | Leaf | 3.998 |
| SRR9715739 | Root | 0.421 |
| SRR9715742 | Root | 1.780 |
| SRR9715743 | Root | 2.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.886 |
| SRR8749028 | MeJA induced 9h | 6.774 |
| SRR8749029 | MeJA induced 9h | 4.896 |
| SRR8749030 | Uninduced | 3.569 |
| SRR8749031 | Uninduced | 3.110 |
| SRR8749032 | Uninduced | 2.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.367 |
| SRR8400027 | Control - Root | 5.580 |