Gene detail

Gene detail information of Glyur002465s00038347

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41550.1	1.00E-77	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_003620205.1	0	Disease resistance protein [Medicago truncatula]
COG	YP_002463148.1	4.00E-09	NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q40392\|TMVRN_NICGU	6.00E-91	TMV resistance protein N
trEMBL	tr\|A0A072UBS0\|A0A072UBS0_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH26886.1}

Sequence

Transcript Sequence

>Glyur002465s00038347.1
ATGGCCGGCTCTTCATCATCATCCTCTTCTTCTGTGACCATCGATGGATTCACCTATGATGTGTTCCTTAGTTTTAGAGGCCTTGATACTCGTCATATTTTTACCGGCAATCTCTATAAAGCTCTCAAGGACAGGGGAATCCGCACCTTCTTTGACAAGGAGAACATTCCACCAGGGAAGGAAATCACACCATCACTTGTCAAGGCAATTGAACAGTCCAGGATGGCAATCGTTGTGCTCTCTCCCAATTATGCAACTTCAGCCTTTTGCTTGGATGAACTTTCCCATATCCTTGATTGCATAACGGGAAGGGGTCGGTTGGTTTGGCCCATTTTCTATGATGTGGACCCTTCTGATGTAAGATGGTTAAAAGGGACTTATGGAGAAGTAATGGCTAAACATGAGGCGAGCTCTAGATATAACGCGGATACCTTGCAGAAATGGAAGAAGGCTCTGCGGATCCATGGAATGGGTGGCATAGGTAAAACGACTCTTGCTCTATCAGTTTACAACTCAATCGCCTGTCAATTTGAAGGTTCATGTTTTCTTCAAAATGTCAGAGAAAATTCAGAGAAACACGAGTTGACATATCTCCAAAATATCCTTCTTTCTGAAATTGTTGGAGAGAAGGAAACTAAGTTAACTAGTGTTAAACAAGGAATTGCTGTAATACGTCAGAGGCTCCGGCAAAAGAAGGTCCTTTTGCTTGTAGACGATGTCAACGAGAAGGAGCAATTACAGGCTATTGCGGGAGAACCAAAATGGTTTGGTCATGGAAGTAGAGTCATTATCACAACACGGGACGAAGGCTTGCTAACATGGTACAGGGTTAAAAGCAAATATGAGATGATGGAGTTGCGCAAGACGGATGCTCTTAAATTGATTAAATGGAAAGTTTTTAGAACTGACAAAGTTAGTCCAAGTTCTACACACACTTTAAATCTTTTAAAGCGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTAGAAGTACTAGGTTCTCACTTATCTGGAATGGAAATAAAAGAATGGCAAGATGCATTAGATGAGTATGAAAGAATCCCCCATATTGAGATCCAACAGATTCTAAAAGTTAGCTTTGATGCATTAGGGGCAGAAGAGAAGATTATTTTTCTCGACATTGCTTGTTGTTTCAAAGGACATAAATTAAAAAATGTGGAAAGAATACTCCATGCTCATCATGATAGAAGCATGAAACATTACATTAGGGTGTTAGTTAAAAAATCTCTCATAAAGATAAGTGAGTCCGGTAATGTGTCATTACATGATTTGATAGAGGACATGGTGAAAGAAATTGTCCGACAAGAATCACCAGAAGATCCCGGAAAACGCAGTAGGTTATGGTCCCCTGAAGATATAGTTCATGTTTTAGAAGATAATACGGGAACAAGTGAAATTGAAGTCATATGTCCCAACTCTTCGATTAAAGTAAACTGGGATGGAGCGGCTTTCAAGAAGATGGAAAAGCTCAGAACACTTATTATTAGCAGTGGTAGTTTTTCCACCAATCCCAAACATCTTCCAAATAGTTTAAGACTACTTGAATGGAAGCAATACCCTTCATCAGGTTTACCGCTTGATTTTTATCCGAAGAAACTTGCCATATGCAAGTTACCTGATAGTAAATTTACATCTATCATGCCAGGAGACTTATTCAAGAAGGCGAGTGAGTTCAAGAATATGAGAGTTTTAAATTTTAACAGTGGTGTATTAACAAACATACCTGATGTATCTGGTCTCCCAAATTTAGAAGAACTCTCATTTCACCATTGTTCGAATTTAATTACAGTTGATGCCTCGGTTGGGTTGTTGGATAAACTCAAAATCTTGACAGCTAGTTATTGCAAAAACCTCAGGAGCATTCCACCTCTCAATTTGCCTTCGCTAGAAGAACTCGATCTTTCACATTGTGTAAGTCTTGAGAGTTTTCAGGATGGGTCGATGGAGAAACTCAAAATCTTGAATGTTAAATGTTGTTGGAAGCTCGTGAGTATTCCGCCTCTCAAGTTGCCTTCGCTAGAAGAACTCAAGCTTTCATATTGTGGAAGTCTTGAGAGTTTTCCACCAGTGGTGGATGGGTCGATGGAGAAACTCAAAATCTTGACAGCTACATTTTGCAAAAAGCTCAGGAGTATTCCGCCTCTCAAGTTGCCTTTGCTAGAAGAACTCGAGCTTTCATGTTGTGAAAGTCTTGAGAGTTTTCCACCAGTGAGTTTTCCACCAGTGGTGGATGGGTCGATGGAGAAACTCAAAATCTTGAGAGTTAAAGGTTGCGAAAAGCTCAGGAGTATTCCGCCTCTCAAGTTGCCTTTGCTAGAAAAACTCGATCTTTTATGGTGTGATAGTCTTGAGAGTTTTCCAGAGATATTAGGAGTGATAGGAAATATAACAGAACTTCACTTGGTATATACTGGTATAAAAAAATTGCCAAATTCATTTCGGAACCTCACTCGGCTTCAAAGATTATATGTGGAACGTGCTCGAATTCAGTTGCCAAGAAGTATTGTCACAATGTCAGAATTGACCACGCTTTGCATCCGTTACGGGGGATGGCAATTCCGAAAAGAGGAAGAGGATGAAGAAAAAGCGAGCCCAATGCAGTTTTCACAAATGAAATTTCTTTATCTCCTGAAATGCAACCTTTCAGACGAATCCTTGGCACTAGGTTTAAAGTGGTTTGCTAATGTGAAAGAATTAGATCTAAGTGGTAAACTCCAGGAAATCAAAGGGATCCCACAAAGCTTAAAAACTTTATCTGCATTCGACTGCAGATCTTTGACTTTGTCGTGTAAAAGCGAGTTACTGAATCGGGAATTGCATGAGGATGGAGACACCGGTTTTCTTTTGCCAGAAGCAGAGATTCCAGAATGGTTCGAGCACCAATGCAGGGAGGGATCGTCAACTTTCTTCTGGTTTCGTAACAAGTTACCTGCCATAACTCTCTGTGTTGTTTCTCAGAAGATATGGTCGAAGCTTAAATACGGCCCGTCCAAACCTGAAGTAATACTACGCATCAATAACAATGAAAATGGGGATATTACTGAGAAAACATACGACCCGATGGAATTGTGTCATCTAGATATATATGATAAGCAAGTGCGAAAATGCTATGATAATCTGGGCGTAGAAATAACGGATAATAATTGGGACACAGTGGAGGTTGACTTTTACGACCCTATGGAATTGTGTCATTTACATATATTTCATATGCAAATGGAAAAACTCGATGTTAATCTGGACAGAGCATTTTCAGAAAATAAGTGGAACCAAGTGGAGGTTGTCTATGAATACCACGGAATCCTGGCAACTGGAATCCATGTATTGAAAGAGAAAAGTAGCATGGAGGATATTCGATTCACCAATCCAGAAAATGATGATGTTATCTAGGAAGCTAAAAAGGGAGCCTTGGTCACTCTTTTGAGAAAACCAACCAAAATCTAGCTGGTTTAAATGCATGGCATAGAAAATCTCCATCAATGCTGGAGGAGGGTTAATGTGGTTTACTCTATTTCTTCCTCTCAAAAGAACTCCAATCACTGAAGAGCTCTAGCAAAAAGACATTTAACAACAGTTCAAGTTTTGCTGAGATGACCGAACTTATACAAGGGAAGGTGAGACAGAAAACTCATATTCCTCACTTGTATCTTGCTCCTGAAG

Protein Sequence

>Glyur002465s00038347.1
MAGSSSSSSSSVTIDGFTYDVFLSFRGLDTRHIFTGNLYKALKDRGIRTFFDKENIPPGKEITPSLVKAIEQSRMAIVVLSPNYATSAFCLDELSHILDCITGRGRLVWPIFYDVDPSDVRWLKGTYGEVMAKHEASSRYNADTLQKWKKALRIHGMGGIGKTTLALSVYNSIACQFEGSCFLQNVRENSEKHELTYLQNILLSEIVGEKETKLTSVKQGIAVIRQRLRQKKVLLLVDDVNEKEQLQAIAGEPKWFGHGSRVIITTRDEGLLTWYRVKSKYEMMELRKTDALKLIKWKVFRTDKVSPSSTHTLNLLKRVVTYASGLPLALEVLGSHLSGMEIKEWQDALDEYERIPHIEIQQILKVSFDALGAEEKIIFLDIACCFKGHKLKNVERILHAHHDRSMKHYIRVLVKKSLIKISESGNVSLHDLIEDMVKEIVRQESPEDPGKRSRLWSPEDIVHVLEDNTGTSEIEVICPNSSIKVNWDGAAFKKMEKLRTLIISSGSFSTNPKHLPNSLRLLEWKQYPSSGLPLDFYPKKLAICKLPDSKFTSIMPGDLFKKASEFKNMRVLNFNSGVLTNIPDVSGLPNLEELSFHHCSNLITVDASVGLLDKLKILTASYCKNLRSIPPLNLPSLEELDLSHCVSLESFQDGSMEKLKILNVKCCWKLVSIPPLKLPSLEELKLSYCGSLESFPPVVDGSMEKLKILTATFCKKLRSIPPLKLPLLEELELSCCESLESFPPVSFPPVVDGSMEKLKILRVKGCEKLRSIPPLKLPLLEKLDLLWCDSLESFPEILGVIGNITELHLVYTGIKKLPNSFRNLTRLQRLYVERARIQLPRSIVTMSELTTLCIRYGGWQFRKEEEDEEKASPMQFSQMKFLYLLKCNLSDESLALGLKWFANVKELDLSGKLQEIKGIPQSLKTLSAFDCRSLTLSCKSELLNRELHEDGDTGFLLPEAEIPEWFEHQCREGSSTFFWFRNKLPAITLCVVSQKIWSKLKYGPSKPEVILRINNNENGDITEKTYDPMELCHLDIYDKQVRKCYDNLGVEITDNNWDTVEVDFYDPMELCHLHIFHMQMEKLDVNLDRAFSENKWNQVEVVYEYHGILATGIHVLKEKSSMEDIRFTNPENDDVI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02465	17354	23738	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002465s00038347.1	PF01582.15	TIR	21	152	1.30E-31
Glyur002465s00038347.1	PF00931.17	NB-ARC	151	396	1.60E-40
Glyur002465s00038347.1	PF00560.28	LRR_1	636	657	0.33
Glyur002465s00038347.1	PF13504.1	LRR_7	679	696	6.1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.138
SRR1783600	control	10.355
SRR1783602	moderate drought stress	9.214
SRR1811619	moderate drought stress	9.358

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.636
DRR006520	Root Summer glycyrrhizin high producing strain	8.322
DRR006521	Root Winter glycyrrhizin high producing strain	3.382
DRR006522	Root Winter glycyrrhizin high producing strain	3.184
DRR006523	Root Summer glycyrrhizin low producing strain	1.093
DRR006524	Root Summer glycyrrhizin low producing strain	0.934
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.543
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.476

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.576
SRR2868004	Drought Stress (root)	2.475
SRR2967015	Control (root)	2.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.855
SRR9715740	Leaf	10.296
SRR9715741	Leaf	24.277
SRR9715739	Root	1.392
SRR9715742	Root	21.939
SRR9715743	Root	18.783

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.117
SRR8749028	MeJA induced 9h	0.142
SRR8749029	MeJA induced 9h	0.081
SRR8749030	Uninduced	0.069
SRR8749031	Uninduced	0.060
SRR8749032	Uninduced	0.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.805
SRR8400027	Control - Root	19.372