Gene detail information of Glyur002465s00038345 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72840.2 | 4.00E-15 | Disease resistance protein (TIR-NBS-LRR class) |
| NR | AES76463.2 | 4.37E-39 | disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula] |
| COG | YP_001869376.1 | 5.00E-07 | hypothetical protein Npun_F6147 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 9.00E-17 | TMV resistance protein N |
| trEMBL | tr|G7KL74|G7KL74_MEDTR | 2.00E-39 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:AES76463.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02465 | 97 | 5531 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002465s00038345.1 | PF00931.17 | NB-ARC | 1 | 100 | 1.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.314 |
| SRR1783600 | control | 4.960 |
| SRR1783602 | moderate drought stress | 4.494 |
| SRR1811619 | moderate drought stress | 4.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.472 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.721 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.910 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.489 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.689 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.186 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.015 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.000 |
| SRR2868004 | Drought Stress (root) | 11.842 |
| SRR2967015 | Control (root) | 11.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.156 |
| SRR9715740 | Leaf | 3.667 |
| SRR9715741 | Leaf | 7.579 |
| SRR9715739 | Root | 0.534 |
| SRR9715742 | Root | 5.720 |
| SRR9715743 | Root | 5.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.870 |
| SRR8749028 | MeJA induced 9h | 1.459 |
| SRR8749029 | MeJA induced 9h | 2.310 |
| SRR8749030 | Uninduced | 0.826 |
| SRR8749031 | Uninduced | 0.878 |
| SRR8749032 | Uninduced | 0.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.197 |
| SRR8400027 | Control - Root | 11.493 |