Gene detail information of Glyur002464s00038627 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06360.1 | 4.00E-122 | Ribosomal protein S8e family protein |
| NR | XP_007135124.1 | 3.51E-164 | hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris] |
| trEMBL | tr|V7AR68|V7AR68_PHAVU | 1.00E-164 | Uncharacterized protein {ECO:0000313|EMBL:ESW07118.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02464 | 18082 | 22577 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002464s00038627.1 | PF01201.17 | Ribosomal_S8e | 1 | 251 | 1.40E-33 |
| Glyur002464s00038627.2 | PF01201.17 | Ribosomal_S8e | 1 | 251 | 1.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.618 |
| SRR1783600 | control | 1.696 |
| SRR1783602 | moderate drought stress | 3.782 |
| SRR1811619 | moderate drought stress | 4.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.492 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.045 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.492 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.867 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.636 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.239 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.579 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.728 |
| SRR2868004 | Drought Stress (root) | 15.305 |
| SRR2967015 | Control (root) | 13.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.538 |
| SRR9715740 | Leaf | 5.621 |
| SRR9715741 | Leaf | 4.391 |
| SRR9715739 | Root | 0.694 |
| SRR9715742 | Root | 2.007 |
| SRR9715743 | Root | 2.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.169 |
| SRR8749028 | MeJA induced 9h | 8.097 |
| SRR8749029 | MeJA induced 9h | 9.013 |
| SRR8749030 | Uninduced | 7.819 |
| SRR8749031 | Uninduced | 2.357 |
| SRR8749032 | Uninduced | 4.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.308 |
| SRR8400027 | Control - Root | 6.800 |