Gene detail information of Glyur002461s00044724 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51730.1 | 1.00E-34 | saposin B domain-containing protein |
| NR | AFK37011.1 | 7.61E-91 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S9R9|I3S9R9_LOTJA | 3.00E-91 | Uncharacterized protein {ECO:0000313|EMBL:AFK37011.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02461 | 3860 | 7403 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002461s00044724.1 | PF05184.10 | SapB_1 | 34 | 70 | 1.60E-06 |
| Glyur002461s00044724.1 | PF03489.12 | SapB_2 | 134 | 167 | 3.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.991 |
| SRR1783600 | control | 1.786 |
| SRR1783602 | moderate drought stress | 1.083 |
| SRR1811619 | moderate drought stress | 0.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.898 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.631 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.387 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.668 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.574 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.544 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.037 |
| SRR2868004 | Drought Stress (root) | 1.213 |
| SRR2967015 | Control (root) | 2.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.072 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.347 |
| SRR9715742 | Root | 1.611 |
| SRR9715743 | Root | 1.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.172 |
| SRR8749028 | MeJA induced 9h | 1.575 |
| SRR8749029 | MeJA induced 9h | 3.407 |
| SRR8749030 | Uninduced | 2.024 |
| SRR8749031 | Uninduced | 1.806 |
| SRR8749032 | Uninduced | 1.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.682 |
| SRR8400027 | Control - Root | 1.526 |