Gene detail information of Glyur002458s00042689 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28050.2 | 1.00E-43 | Cytidine/deoxycytidylate deaminase family protein |
| NR | XP_004488180.1 | 1.07E-75 | PREDICTED: guanine deaminase-like isoform X1 [Cicer arietinum] |
| COG | YP_004615695.1 | 2.00E-14 | CMP/dCMP deaminase zinc-binding protein [Methanosalsum zhilinae DSM 4017] |
| trEMBL | tr|B7FGY2|B7FGY2_MEDTR | 1.00E-74 | Uncharacterized protein {ECO:0000313|EMBL:AFK43838.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02458 | 16730 | 18753 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002458s00042689.1 | PF00383.17 | dCMP_cyt_deam_1 | 46 | 105 | 3.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.657 |
| SRR1783600 | control | 0.422 |
| SRR1783602 | moderate drought stress | 0.900 |
| SRR1811619 | moderate drought stress | 0.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.100 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.574 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.862 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.824 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.310 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.688 |
| SRR2868004 | Drought Stress (root) | 39.335 |
| SRR2967015 | Control (root) | 100.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.882 |
| SRR9715740 | Leaf | 1.876 |
| SRR9715741 | Leaf | 0.337 |
| SRR9715739 | Root | 0.251 |
| SRR9715742 | Root | 0.615 |
| SRR9715743 | Root | 0.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.033 |
| SRR8749030 | Uninduced | 0.049 |
| SRR8749031 | Uninduced | 0.611 |
| SRR8749032 | Uninduced | 0.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.663 |
| SRR8400027 | Control - Root | 1.156 |