Gene detail

Gene detail information of Glyur002456s00039883

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13010.1	7.00E-106	Oxidoreductase, zinc-binding dehydrogenase family protein
NR	AFK36431.1	0	unknown [Lotus japonicus]
COG	YP_007081531.1	3.00E-48	Zn-dependent oxidoreductase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9SV68\|QORH_ARATH	2.00E-148	Putative quinone-oxidoreductase homolog, chloroplastic
trEMBL	tr\|I3S839\|I3S839_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36431.1}

Sequence

Transcript Sequence

>Glyur002456s00039883.1
AGAGAAATAGAGTTATACGTGCCTATGTGGTGACGGTTATGGCTCCTAATCTTATGCAAGCGGTTCAGTACGAGTCCTTTGGAGGAGGTGTCGCCGTTCCTGTTCCCACTCCAAAGAACAATGAGGTTTTGCTGAAATTGGAAGCAACAAGCATAAACCCAGTTGATTGGAAGCTTCAGACGGGTGCTGCACGGCCTTTACTTCTCCCTCGATACTTACCCCACATACCTTGCACTGATGTAGCAGGAGAGATAGTAGAGGTTGGACCACAAGTCAAACATTTTGAAGTTGGTGACAAAGTCATTGCTAAACTCTTACAGCGTTATGGGGGTGGACTAGCTGAGTTTGCAGTGGCTACTGAGAGCTTAACAGCTTCAAGACCATCTGAAGTCTCAGCTGCTGAAGGTTCTGGTTTACCTGTGGCCGGTCTCACAGCTCATGATGCCCTCACTCAAATTGCAGGAAACGTTTTAGTAACTGCTGCTTCAGGTGGTGTAGGCTCATATGCTGTTCAACTTGCTAAACTTGGGAACAACCATGTCACAGCCACTTGTGGAGCTCGAAACATTGACCTTGTTAAGGGCTTAGGTGCTGATGAGGTTCTTGATTATAGGACTCCAGAGGGAGCAGCACTCAGGAGTCCATCTGGGAGGAAATATGATGCAGTGATACATTGTACCACTGGAATACCATGGTCAACTTTTGATTGTAATTTGGCTGAAAAGGGTATTGTAGTTGATCTAACACCTGGTGTAAGTTCATTTATGACTTTTGCCCTGAAGAAACTTACTTTTTCCAAGAAGAAGCTGGTGTCATTTTTTGTAAGTGTCAAGCGCGAGGGCTTGGAGTATCTACTTCAATTAGTGAAGGATGGGAAACTGAAGACAATTATTGACTCCAAGTTTCCTTTGAGCAAAGCTGAAGATGCTTGGGCTAAGAGCATTGATGGCCATGCTACTGGAAAAATCATTGTGGAGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02456	37362	39555	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002456s00039883.1	PF08240.7	ADH_N	28	93	2.20E-09
Glyur002456s00039883.1	PF13602.1	ADH_zinc_N_2	183	312	2.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.087
SRR1811619	moderate drought stress	0.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.108
DRR006520	Root Summer glycyrrhizin high producing strain	0.110
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.053
DRR006523	Root Summer glycyrrhizin low producing strain	0.056
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.820
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.838

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.770
SRR2868004	Drought Stress (root)	9.517
SRR2967015	Control (root)	6.676

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.907
SRR9715740	Leaf	0.897
SRR9715741	Leaf	1.824
SRR9715739	Root	0.000
SRR9715742	Root	0.083
SRR9715743	Root	0.188

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.341
SRR8749028	MeJA induced 9h	0.400
SRR8749029	MeJA induced 9h	0.370
SRR8749030	Uninduced	3.107
SRR8749031	Uninduced	5.220
SRR8749032	Uninduced	2.665

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.178
SRR8400027	Control - Root	0.481