Gene detail

Gene detail information of Glyur002456s00039880

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72160.1	8.00E-157	Sec14p-like phosphatidylinositol transfer family protein
NR	XP_004506378.1	0	PREDICTED: patellin-3-like [Cicer arietinum]
Swissprot	tr\|Q56Z59\|PATL3_ARATH	0	Patellin-3
trEMBL	tr\|B7FL90\|B7FL90_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK44639.1}

Sequence

Transcript Sequence

>Glyur002456s00039880.1
ATGGCCGATAATAACAACGACCCAAACCCTATTCCTCCTCCTGCTCCCACCGTTACGCCGCCACAAGAGCCCGATTCATCCACCGTAACCGGGGAACCGGAACTCCCGGTAACCGAGAAGAACGAATCGCCTCCAGCACCGTTGCAGGTAGCAGAAGAAACAGAAAACGATGCAAAACCCGAAACGACACAGGATGCGGTTGTCGTTGAACGCGAAGAAGAGGAAGAGAAACAGCAGCAACAGCAAGAGCATAAGATTCCACAGAATTTGGTGTCGTTTAAGGAAGAGAGCAACAGGGTAAGCGATCTATCGGATTCAGAGAGAACCTCCCTCGAAGAACTGAAGCAGCTTCTAACAGAGTCGCTCAGCGAAGAAGAAGTTTCCATTTGGGGTGTTCCTCTGCTGAAGGACGAGAGAACCGACGTGATACTCCTAAAGTTTCTGAGGGCGCGTGAGTTCAAAGTTAAGGACGCGCTTACCATGATAAACAACACGCTCCGGTGGAGGAAAGAGTTCAACATCGACGCGCTATTGGAGGAAGATCTCGGTGATGATTTGGATAAGGTTGTTTTCATGCACGGTTATGCAAGGGAAGGGCACCCTGTGTGTTACAATGTGTACGGTGAGTTTCAGAACAGGGAACTCTACAATAAGACTTTCTCTGATGAGGAGAAGAGGGACAAGTTCTTACGGTGGAGGATTCAGTTCTTGGAGAGGAGTATTCGGAAACTCGATTTTGCACCTGGTGGGATCAACACTGTTGTCCAAGTCAATGACCTTAAGAACTCTCCTGGACCTGCTAAAAGGGAGCTTCGACTTGCTACCAAACAAGCACTGCAATTGCTTCAGGATAATTATCCTGAGTTTGTTTTTATCAATGTTCCTTGGTGGTATCTTGCATTCTATACCATGATCAATCCGTTCTTGACTCAGAGGACAAAGAGTAAATTTGTGTTTGCAGGACCAGCCAAGTCTCCTGACACACTTTTCAAGTATATTTCTCCTGAGCAAGTGCCAGTTCAGTATGGTGGCCTGAGTGTAGATTTCTGTGACTGCAACCCGGATTTCAGTATGTCTGATCCTACCACTGAAATTCCTATAAAGCCGAACACGAAGCAAACTGTGGAAATTGCTATCTATGAGAAATGCATTATTGTCTGGGAGTTGCGTGTGGTGGGTTGGGAGGTTAGCTATAATGCTGAATTTAAGCCTGATGCTAAGGATGGATATATAGTCATTATACAGAAGGCTACAAAGATGTCCCCGAGTGACGAACCGGTGGTTTCCAATAGCTTCAAAGTTGGGGAATTGGGCAAATTGTTGCTCACTATCGACAACCCCACCATGAAAAAGAAGAGGCTTCTTTACAGGTTCAAGATCAANCCCTACTGTGATTAAGGAGAGGAAATCATCCCTAGTCTCTCGAGTGGATTTCGGGTACATGGAGGAAATTTGAACTTGAAAGAGTAAGAAGAAGTATGCATGTCATCATATTCGTTCAGCACATTATTCTTCTATAGTTTTGGTCATGAGTTGTTTGCAGATGGCTTTCTCTGTCTTTATTGTATTTAATACTTTATTTTGTTGCCAGATAAAACATTTTAGCTAGTCTAAGTTTGTTCTTTTATTTTCTGGTGATGAGCAATGTGAAGGAAGAGAGTAGCATACGGAATTGGAATTGGAGTTGGAGTTGGTTTATGAGATTTATACATATTACCAGAATCATGTGTCACTTTGATTGGGAAACCAACATGTAGAAAGCCTGGTTAAAAGAAGTTCCAATGTAAAATTTTGTTCTTATACTTATCCAGTGTGAAACTCTGTGTATGTTGCATTACATATCTGGTCCCAATTCTAGTGAAGGAGGGTTTTGTTAGGCAATCAACAGCTAACTCAACTTTGTCGAATCCTCATGATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02456	24216	26843	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component

GO:0005622 intracellular

GO:0016021 integral component of membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002456s00039880.1	PF03765.10	CRAL_TRIO_N	111	165	9.90E-10
Glyur002456s00039880.1	PF00650.15	CRAL_TRIO	189	344	4.50E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	81.164
SRR1783600	control	81.152
SRR1783602	moderate drought stress	57.070
SRR1811619	moderate drought stress	56.290

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	110.589
DRR006520	Root Summer glycyrrhizin high producing strain	110.215
DRR006521	Root Winter glycyrrhizin high producing strain	91.584
DRR006522	Root Winter glycyrrhizin high producing strain	89.503
DRR006523	Root Summer glycyrrhizin low producing strain	91.646
DRR006524	Root Summer glycyrrhizin low producing strain	93.183
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.881
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.840

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	138.052
SRR2868004	Drought Stress (root)	95.210
SRR2967015	Control (root)	96.027

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.935
SRR9715740	Leaf	50.125
SRR9715741	Leaf	40.630
SRR9715739	Root	36.817
SRR9715742	Root	88.162
SRR9715743	Root	79.579

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	60.283
SRR8749028	MeJA induced 9h	28.704
SRR8749029	MeJA induced 9h	23.210
SRR8749030	Uninduced	13.457
SRR8749031	Uninduced	4.323
SRR8749032	Uninduced	6.322

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	140.515
SRR8400027	Control - Root	179.240