Gene detail information of Glyur002455s00031747 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12020.1 | 1.00E-28 | 17.6 kDa class II heat shock protein |
| NR | ACF74271.1 | 3.08E-50 | class II small heat shock protein Le-HSP17.6 [Arachis hypogaea] |
| COG | YP_004340108.1 | 4.00E-17 | heat shock protein Hsp20 [Hippea maritima DSM 10411] |
| Swissprot | tr|Q01544|HSP21_IPONI | 7.00E-53 | 17.2 kDa class II heat shock protein |
| trEMBL | tr|Q9XGS6|Q9XGS6_PRUDU | 7.00E-54 | Cytosolic class II low molecular weight heat shock protein {ECO:0000313|EMBL:AAD41409.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02455 | 37538 | 39715 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002455s00031747.1 | PF00011.16 | HSP20 | 49 | 144 | 3.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.039 |
| SRR1783600 | control | 2.163 |
| SRR1783602 | moderate drought stress | 4.997 |
| SRR1811619 | moderate drought stress | 5.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.011 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.123 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.890 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.807 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.138 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.202 |
| SRR2868004 | Drought Stress (root) | 2.262 |
| SRR2967015 | Control (root) | 2.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.189 |
| SRR9715740 | Leaf | 0.090 |
| SRR9715741 | Leaf | 1.057 |
| SRR9715739 | Root | 2.520 |
| SRR9715742 | Root | 0.485 |
| SRR9715743 | Root | 1.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.392 |
| SRR8749028 | MeJA induced 9h | 0.719 |
| SRR8749029 | MeJA induced 9h | 0.551 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.105 |
| SRR8749032 | Uninduced | 0.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.437 |
| SRR8400027 | Control - Root | 4.283 |