Gene detail

Gene detail information of Glyur002455s00031745

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G19170.1	presequence protease 1
NR	XP_004511282.1	PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Cicer arietinum]
COG	YP_004173143.1	putative M16C family peptidase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q9LJL3\|PREP1_ARATH	Presequence protease 1, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A072UDY2\|A0A072UDY2_MEDTR	Presequence protease {ECO:0000313\|EMBL:KEH27308.1}

Sequence

Transcript Sequence

>Glyur002455s00031745.1
TTTAATTTTTGTGGTTTAGCATTGTATTCAAGATTATTATTATTGTAGCCGATATTGTTACACGGAAGGAAGAAAGAAAGAAAGGAACAAGAGAGATTTTAATATAGGGAGTTTGATTATGGGGATGGAAGGTAGAGTGCATTGAGAAAGATAAATAGGGATAATACTATAGGGATTAGGGAGAGGAGAGACGAGACAGGAACAGGANAGTGAGCGAGTGAGTAAAGTAAGGTTTGATGGAAAGGGCGGCACTGGTTCGTTCTCTGTCGAGCAGATATTTGTGTCGTCGCTCCATAAGTATAACCGCTCTCTTCCCAGCGAGTGCTGTGACAACAAGAAGGTCCTCTCTGAATGTTCCCAGAGCCAGATCCAAAACCAGATTGAGATTGCTTCCCTCCTCCTCTTGTTCTCCGCTCCTTCACTTCCGCAACCGTAGTAACCATTTCTCCTCTTCCGTCTCCCCTCGCGCCGCCCTTGTTTCATCTCCATCCCCTCCAGAATTTGCTCAGGTGAAGGATGAAGTTGCCCATCAACTGGGGTTTCAGAAAGTTTCCGAGGAATTCATTCCCGAATGCAAATCAAAAGCCGTGCTGTTCAGGCACATCAAGACCGGGGCTGAAGTCATGTCTCTTTCCAATCACGACGAGAATAAAGTCTTCGGCATTGTTTTCCGCACCCCTCCGAATGATTCCACCGGAATCCCTCACATTTTGGAACACAGTGTATTGTGTGGGTCAAGAAAATATCCTTTGAAAGAGCCATTTGTTGAATTATTGAAAGGAAGCTTGCACACTTTCCTCAATGCATTCACATATCCTGATAGGACCTGTTACCCGGTAGCTTCCACAAATACCAAGGATTTCTATAATCTGGTTGATGTCTACCTGGATGCGGTTTTCTTTCCTAGATGTGTGGAGGACCTTCAGACTTTTCAACAGGAGGGTTGGCACTTTGAGCTCAATGATCCTTCTGAAGATATCACTTATAAAGGTGTTGTGTTTAATGAGATGAAAGGTGCTCTTTTCCCAGACACTACCTATGGTGTAGACAGCGGAGGTGATCCTCAAGTTATTCCTAAGTTGACATTTGAGGAATTTAAGGAATTTCACCGCAAGTATTACCATCCCAGCAATTCGCGAATATGGTTTTATGGAGATGATGATCCAAATGAGCGCCTCCGCATCCTGAGCGAGTATTTAGACATGTTTGATGCGAGTTCAGCCCCTAATGAATCAAAGGTTGAACCACAGAAACTATTTTCAAAGCCAGTCCGAATTGTTGAGACATATCCTGCAGGGGAAGGGAGTGATTTGAAGAAGCATATGGTCTGCCTTAATTGGTTGCTCTCTGATAAGCCCTTAGACATGGAAACTGAGCTAACACTTGGTTTTCTGAATCATCTTCTGCTGGGCACTCCTGCTTCACCACTGCGAAAAATTTTGCTAGAAAGTGGACTGGGCGACGCCATTGTTGGTGGTGGGTTAGAAGATGAACTACTCCAGCCTCAATTTAGCATTGGAATGAAGGGTGTTTCTGAAGATGACATTCATAAAGTAGAAGAACTGATCACGAGTACACTTAAAAAGTTGGCCGAAGAAGGTTTTGATACAGATGCCATTGAGGCTTCTATGAATACAATTGAATTTTCTCTGAGAGAGAACAACACTGGGTCATTTCCTCGAGGCTTGTCCCTCATGCTCCAGTCTATTGGTAAATGGGTTTATGATATGAATCCCTTTGAGCCACTGAAGTACGAGAAACCTCTGCAAGACCTAAAATCTAAAATAGCAAAGGAGGGCTCCAAATCTGTTTTTTCTCCACTAATAGAGAAATTCATCTTGAACAACTCTCATCAAGTTACTGTGGAAATGCAGCCGGACCCTGAAAAAGCTGCTCGTGNTGAAGCCACAGAGAAACAGATATTGCAGAAAGTTAAAGCTAGTATGACAACAGAAGATCTAGCAGAGTTGACTCGTGCTACTTATGAGCTTAGGCTTAAGCAGGAAACACCTGACCCACCTGAAGCTTTGAAAACTGTTCCTAGCCTTTCTCTGCAAGACATTCCTAAAGAACCTATTCGTGTTCCTACTGAGGTCGGAGATATCAATGGAGTAAAAGTTCTGCAGCATGATCTCTTCACCAATGATGTCCTTTACACTGAAATAGTATTCAACATGAGTTCATTGAAGCAAGAGCTTCTTCCATTGGTGCCACTCCAATCATTGCTGGAGATGGGCACAAAGGACTTGACTTTTGTCCAGCTAAACCAATTAATCGGGAGAAAAACTGGAGGACTATCAGTTTATCCATTCACATCATCAGTGCGGGGCAAGGAAGATCCATGTAGTCACTTGATTGTTCGAGGCAAAGCCATGGCTGGATGTGTTGAAGACCTTTATGACTTGGTTAATTCTGTTCTTCAAGACGTCCAATTTACAGACCAACACCGTTTCAAACAATTTGTTTCGCAGAGTAGAGCGAGAATGGAGAANCGGCTAAGAGGCAGTGGTCATGGAATTGCAGCTGCAAGGATGGATGCAAAACTAAACGCAGCAGGCTGGATGTCAGAAAAGATGGGTGGTCTCAGTTACCTCGAATTCCTCCAAACTCTTGAAAAGAGAGTTGATCAAGATTGGGCTGATATCTCATCATCTCTTGAGGAGATTCGCAAGTCTGTGTTTTGCAAGCAAGACTGCTTGATAAATATCACTGCTGATGGGAAAAACCTTGCAAACATGGAAAAATTTGTGAGCAAATTTGTTGATATGCTCCCTACTAGCTCTCCCGTTGCAACAACAAATACTTGGAATGTTAAACTTCCATTGACAAATGAAGCTATTGTGATTCCTACTCAGGTTAATTACGTTGGAAAAGCAGCCAACATTTATGATACTGGTTATGAGCTTCGTGGGAGTGCCTATGTTATTTCCAAATACATTAGCAATACATGGCTGTGGGATCGTGTACGTGTTAGTGGTGGAGCTTATGGAGGTTTCTGTGATTTTGATACACATTCAGGAGTGTTCTCCTTCTTATCTTATCGTGATCCCAACTTGCTGAAGACACTTGAGGTATATGATGGAGCTGGTGACTTTTTAAGAGAACTGGAAATAGATGATGATACTCTAACAAAAGCCATAATAGGGACTATTGGGGATGTAGACGCCTATCAACTTCCTGATGCCAAAGTATGTTGCGCTACTTACTGGGTATCACCGAGGAAGAAAGGCAAANGAGACGTGAAGAGATATTATCTACCAGTTAAGCATAAAGGGGTTGTGGTTGCAGTGGCTTCTCCCGAGGATGTAGACGCAGCAAACAAAGAGCTTTCCAACTTCTTTCAAGTAAAGAAAGCCCTTTAG

Protein Sequence

>Glyur002455s00031745.1
MERAALVRSLSSRYLCRRSISITALFPASAVTTRRSSLNVPRARSKTRLRLLPSSSCSPLLHFRNRSNHFSSSVSPRAALVSSPSPPEFAQVKDEVAHQLGFQKVSEEFIPECKSKAVLFRHIKTGAEVMSLSNHDENKVFGIVFRTPPNDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPRCVEDLQTFQQEGWHFELNDPSEDITYKGVVFNEMKGALFPDTTYGVDSGGDPQVIPKLTFEEFKEFHRKYYHPSNSRIWFYGDDDPNERLRILSEYLDMFDASSAPNESKVEPQKLFSKPVRIVETYPAGEGSDLKKHMVCLNWLLSDKPLDMETELTLGFLNHLLLGTPASPLRKILLESGLGDAIVGGGLEDELLQPQFSIGMKGVSEDDIHKVEELITSTLKKLAEEGFDTDAIEASMNTIEFSLRENNTGSFPRGLSLMLQSIGKWVYDMNPFEPLKYEKPLQDLKSKIAKEGSKSVFSPLIEKFILNNSHQVTVEMQPDPEKAARXEATEKQILQKVKASMTTEDLAELTRATYELRLKQETPDPPEALKTVPSLSLQDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEIVFNMSSLKQELLPLVPLQSLLEMGTKDLTFVQLNQLIGRKTGGLSVYPFTSSVRGKEDPCSHLIVRGKAMAGCVEDLYDLVNSVLQDVQFTDQHRFKQFVSQSRARMEXRLRGSGHGIAAARMDAKLNAAGWMSEKMGGLSYLEFLQTLEKRVDQDWADISSSLEEIRKSVFCKQDCLINITADGKNLANMEKFVSKFVDMLPTSSPVATTNTWNVKLPLTNEAIVIPTQVNYVGKAANIYDTGYELRGSAYVISKYISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLEVYDGAGDFLRELEIDDDTLTKAIIGTIGDVDAYQLPDAKVCCATYWVSPRKKGKXDVKRYYLPVKHKGVVVAVASPEDVDAANKELSNFFQVKKAL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02455	16524	24670	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0003824 catalytic activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002455s00031745.1	PF00675.15	Peptidase_M16	149	228	5.70E-06
Glyur002455s00031745.1	PF05193.16	Peptidase_M16_C	281	467	8.80E-23
Glyur002455s00031745.1	PF08367.6	M16C_assoc	545	792	1.90E-57
Glyur002455s00031745.1	PF05193.16	Peptidase_M16_C	833	959	7.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.566
SRR1783600	control	40.669
SRR1783602	moderate drought stress	52.156
SRR1811619	moderate drought stress	51.899

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.098
DRR006520	Root Summer glycyrrhizin high producing strain	44.107
DRR006521	Root Winter glycyrrhizin high producing strain	34.296
DRR006522	Root Winter glycyrrhizin high producing strain	33.634
DRR006523	Root Summer glycyrrhizin low producing strain	40.453
DRR006524	Root Summer glycyrrhizin low producing strain	40.380
DRR006525	Leaf Summer glycyrrhizin high producing strain	178.036
DRR006526	Leaf Summer glycyrrhizin high producing strain	176.755

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	72.473
SRR2868004	Drought Stress (root)	67.107
SRR2967015	Control (root)	72.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	147.536
SRR9715740	Leaf	243.936
SRR9715741	Leaf	149.760
SRR9715739	Root	14.539
SRR9715742	Root	63.501
SRR9715743	Root	51.779

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.989
SRR8749028	MeJA induced 9h	53.006
SRR8749029	MeJA induced 9h	30.922
SRR8749030	Uninduced	20.133
SRR8749031	Uninduced	13.611
SRR8749032	Uninduced	17.160

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	92.158
SRR8400027	Control - Root	92.685