Gene detail information of Glyur002454s00039735 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01030.2 | 7.00E-59 | Protein of unknown function (DUF3527) |
| NR | KHN32511.1 | 0 | hypothetical protein glysoja_042587 [Glycine soja] |
| trEMBL | tr|K7KDK4|K7KDK4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G15896.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02454 | 23276 | 28330 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002454s00039735.1 | PF12043.3 | DUF3527 | 625 | 738 | 9.50E-24 |
| Glyur002454s00039735.1 | PF12043.3 | DUF3527 | 749 | 917 | 5.00E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.300 |
| SRR1783600 | control | 16.323 |
| SRR1783602 | moderate drought stress | 6.419 |
| SRR1811619 | moderate drought stress | 6.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.501 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.316 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.063 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.432 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.420 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.532 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.778 |
| SRR2868004 | Drought Stress (root) | 2.660 |
| SRR2967015 | Control (root) | 3.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.392 |
| SRR9715740 | Leaf | 0.050 |
| SRR9715741 | Leaf | 0.256 |
| SRR9715739 | Root | 1.830 |
| SRR9715742 | Root | 4.200 |
| SRR9715743 | Root | 3.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.758 |
| SRR8749028 | MeJA induced 9h | 1.166 |
| SRR8749029 | MeJA induced 9h | 1.368 |
| SRR8749030 | Uninduced | 0.036 |
| SRR8749031 | Uninduced | 0.131 |
| SRR8749032 | Uninduced | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.626 |
| SRR8400027 | Control - Root | 13.313 |