Gene detail information of Glyur002453s00041603 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05830.1 | 7.00E-51 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | KHN14593.1 | 4.39E-141 | hypothetical protein glysoja_037570 [Glycine soja] |
| trEMBL | tr|C6TNS0|C6TNS0_SOYBN | 4.00E-140 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G17130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02453 | 18449 | 21875 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002453s00041603.1 | PF12906.2 | RINGv | 104 | 155 | 6.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.308 |
| SRR1783600 | control | 5.588 |
| SRR1783602 | moderate drought stress | 4.825 |
| SRR1811619 | moderate drought stress | 4.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.307 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.922 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.845 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.896 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.908 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.229 |
| SRR2868004 | Drought Stress (root) | 6.289 |
| SRR2967015 | Control (root) | 10.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.306 |
| SRR9715740 | Leaf | 8.273 |
| SRR9715741 | Leaf | 3.549 |
| SRR9715739 | Root | 14.412 |
| SRR9715742 | Root | 10.030 |
| SRR9715743 | Root | 10.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.787 |
| SRR8749028 | MeJA induced 9h | 0.524 |
| SRR8749029 | MeJA induced 9h | 0.408 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.922 |
| SRR8400027 | Control - Root | 16.081 |