Gene detail information of Glyur002448s00031642 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16720.1 | 0 | high chlorophyll fluorescence phenotype 173 |
| NR | XP_007135880.1 | 0 | hypothetical protein PHAVU_010G165800g [Phaseolus vulgaris] |
| COG | NP_489066.1 | 3.00E-17 | hypothetical protein all5026 [Nostoc sp. PCC 7120] |
| Swissprot | tr|P49534|YCF39_ODOSI | 9.00E-06 | Uncharacterized protein ycf39 |
| trEMBL | tr|V7AQP0|V7AQP0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW07874.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02448 | 34223 | 40093 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002448s00031642.1 | PF13460.1 | NAD_binding_10 | 155 | 270 | 1.60E-11 |
| Glyur002448s00031642.1 | PF08547.7 | CIA30 | 286 | 393 | 3.00E-08 |
| Glyur002448s00031642.1 | PF13976.1 | gag_pre-integrs | 506 | 554 | 1.00E-09 |
| Glyur002448s00031642.2 | PF13460.1 | NAD_binding_10 | 155 | 271 | 1.30E-11 |
| Glyur002448s00031642.2 | PF08547.7 | CIA30 | 286 | 393 | 2.40E-08 |
| Glyur002448s00031642.3 | PF13460.1 | NAD_binding_10 | 155 | 271 | 1.30E-11 |
| Glyur002448s00031642.3 | PF08547.7 | CIA30 | 286 | 393 | 2.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.557 |
| SRR1783600 | control | 2.285 |
| SRR1783602 | moderate drought stress | 2.262 |
| SRR1811619 | moderate drought stress | 2.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.857 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.838 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.767 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.280 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.248 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.270 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.952 |
| SRR2868004 | Drought Stress (root) | 14.414 |
| SRR2967015 | Control (root) | 11.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.974 |
| SRR9715740 | Leaf | 92.347 |
| SRR9715741 | Leaf | 57.608 |
| SRR9715739 | Root | 1.275 |
| SRR9715742 | Root | 2.441 |
| SRR9715743 | Root | 2.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.760 |
| SRR8749028 | MeJA induced 9h | 3.281 |
| SRR8749029 | MeJA induced 9h | 1.746 |
| SRR8749030 | Uninduced | 0.526 |
| SRR8749031 | Uninduced | 0.449 |
| SRR8749032 | Uninduced | 0.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.926 |
| SRR8400027 | Control - Root | 7.785 |