Gene detail information of Glyur002446s00040163 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01750.1 | 2.00E-07 | actin depolymerizing factor 11 |
| NR | EPS67245.1 | 8.80E-07 | hypothetical protein M569_07530, partial [Genlisea aurea] |
| Swissprot | tr|Q0DLA3|ADF7_ORYSJ | 4.00E-09 | Actin-depolymerizing factor 7 |
| trEMBL | tr|A0A068TUX5|A0A068TUX5_COFCA | 9.00E-08 | Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDP00056.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02446 | 19536 | 33286 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002446s00040163.1 | PF00241.15 | Cofilin_ADF | 103 | 139 | 8.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.300 |
| SRR1783600 | control | 0.399 |
| SRR1783602 | moderate drought stress | 0.476 |
| SRR1811619 | moderate drought stress | 0.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.125 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.039 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.294 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.729 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.652 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.160 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.387 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.732 |
| SRR2868004 | Drought Stress (root) | 1.627 |
| SRR2967015 | Control (root) | 1.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.264 |
| SRR8749028 | MeJA induced 9h | 3.284 |
| SRR8749029 | MeJA induced 9h | 3.234 |
| SRR8749030 | Uninduced | 2.262 |
| SRR8749031 | Uninduced | 1.357 |
| SRR8749032 | Uninduced | 0.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.935 |
| SRR8400027 | Control - Root | 0.484 |