Gene detail information of Glyur002441s00035144 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65340.1 | 8.00E-53 | Protein of unknown function, DUF617 |
| NR | AES72165.2 | 6.38E-98 | DUF617 family protein [Medicago truncatula] |
| Swissprot | tr|O22227|MIZ1_ARATH | 3.00E-34 | Protein MIZU-KUSSEI 1 |
| trEMBL | tr|G7J372|G7J372_MEDTR | 2.00E-98 | DUF617 family protein {ECO:0000313|EMBL:AES72165.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02441 | 19623 | 20342 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002441s00035144.1 | PF04759.8 | DUF617 | 37 | 200 | 2.30E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.489 |
| SRR1783600 | control | 0.257 |
| SRR1783602 | moderate drought stress | 0.429 |
| SRR1811619 | moderate drought stress | 0.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.713 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.814 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.899 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.722 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.349 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.180 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.108 |
| SRR2868004 | Drought Stress (root) | 1.769 |
| SRR2967015 | Control (root) | 1.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.031 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.206 |
| SRR9715742 | Root | 1.069 |
| SRR9715743 | Root | 0.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.147 |
| SRR8400027 | Control - Root | 1.383 |