Gene detail

Gene detail information of Glyur002441s00035141

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_003601915.1	0	Glucan 1,3-beta-glucosidase [Medicago truncatula]
COG	YP_002354525.1	2.00E-36	glucan 1,3-beta-glucosidase [Thauera sp. MZ1T]
trEMBL	tr\|G7J373\|G7J373_MEDTR	0	Glycoside hydrolase family 5 protein {ECO:0000313\|EMBL:AES72166.1}

Sequence

Transcript Sequence

>Glyur002441s00035141.1
CACCCCACATTTTAAAGTGCTTTCTCTGCTTTGAGTTCTCTCTTGTACATAATTGGGGCTTTGCATTTTTCCTATGATGGATTCTGCATTTTTGCTTCCTGGGTGCTTTTGAAGCCCGCATTCTTGATGGGACTTGTTTTCACCAAATGGGCATGCGCATTCTTACTCTGTTGTTGTCTCATCACTTCTGGAGTGTATTCAGGTTGGATCAAACCTTCATTGTTTGATGGCATTGCCAATGGTGACATGCTTAAGTATGTATCTGCTGAGAATGGGGGAGGAATGAATGTGACAGTTGACAGGGATGNCCCATCTTCATGGGAAACCTTCAGGTTATGGAGAGTATCAGAATCAGAATTTCAATTCCGTACCAGCCAAGGCCAATTTCTTACATGTGATGGTGAAGGCTGCTCTGTCTCTGCAACAGCAAAATCTGCTTCAAAATCAGAGACATTTGAAGTTGAGAAGAATGAGAAAAATAGGATTCACATCAAGATAAAGAATGGGGCTTATCTCCAGGCTACAACAGGGAATGTGCTTACAGCAGACTATCCAGGTGCACCAGGATGGGATGATAATGCCGCCACGTTTGAAATGACAATTGTATCAAATAACCTACATGGAGATTACCAGCTAGCAAATGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCGGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCGAGTCCGTTTATTGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTTCGTGGGCACAAGATTATGATATAAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCCCAAAATGGGATGGAGCATAGTGCAAGCAGAGATGGATTTACAGGCTGGCCGACTTCTCCGGATCACATTTCAGAGTCATTACATGTTATTGATTTTTTGGCTTCTAGATATGCAAGACATCCTGCCTTGCTGGGAATAGAGCTTTTGAATGAACCATCTGCTGGCACTGTTCCATTAGATACTTTAATCTCCTATTACAAGCAGGGCTACCAAATCATTCGGAAACACTCGTCNTCAGCTTATGTGATAATGTGTCAGAGAATTGGCAATGCAGATCCTTTGGAACTTTATCAAGCCAACATAGGATCTAACAACTTGGTTTTGGATATACATTTCTACAATCTCTTTGACACATTTTTTGTTAATATGAGCGCTGGGGATAATATACAATACATATACAAAAGCCGGGAAGGTCTGTTGCAGGCCTTCAACAATTCAAATGGCCCACTCATTTTTATNGATGTCTATAACGCAGCTTCCTTTGGCTGGTGTTATTGGACGCTAAAAAATGATAGGGAGCACTGGGATTTTGAATGGAACATTAGGAATAACTATCTTCAATTAGGTAACTCACCCAGCAAACAGAACTTAAACGCTTTAGGATTGTTAGGATTAGGATTGGCATGCACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02441	5119	10666	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0007015 actin filament organization

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0051015 actin filament binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002441s00035141.1	PF06229.7	FRG1	58	134	1.00E-05
Glyur002441s00035141.1	PF00150.13	Cellulase	152	362	1.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.854
SRR1783600	control	4.013
SRR1783602	moderate drought stress	1.550
SRR1811619	moderate drought stress	1.522

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.151
DRR006520	Root Summer glycyrrhizin high producing strain	4.209
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	5.178
DRR006524	Root Summer glycyrrhizin low producing strain	5.109
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.696

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.713
SRR2868004	Drought Stress (root)	4.925
SRR2967015	Control (root)	4.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.456
SRR9715740	Leaf	1.341
SRR9715741	Leaf	0.934
SRR9715739	Root	0.652
SRR9715742	Root	1.671
SRR9715743	Root	1.216

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.698
SRR8749028	MeJA induced 9h	0.615
SRR8749029	MeJA induced 9h	0.478
SRR8749030	Uninduced	0.212
SRR8749031	Uninduced	0.399
SRR8749032	Uninduced	0.029

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.066
SRR8400027	Control - Root	6.369