Gene detail

Gene detail information of Glyur002430s00039737

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39800.4	0	delta1-pyrroline-5-carboxylate synthase 1
NR	KHN05644.1	0	Delta-1-pyrroline-5-carboxylate synthase [Glycine soja]
COG	YP_003890616.1	2.00E-109	gamma-glutamyl phosphate reductase [Cyanothece sp. PCC 7822]
Swissprot	tr\|O04226\|P5CS_ORYSJ	0	Gamma-glutamyl phosphate reductase
trEMBL	tr\|I1JLN5\|I1JLN5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G12240.1}

Sequence

Transcript Sequence

>Glyur002430s00039737.1
AACTTTTTTCCTAGTTCTGCAATTAATGCATGTGTTTGTTGGATTATCTTTTATTGAAGGTTGGAACAGCTGTTGTTACTAGAAGTGATGGAAGATTAGCACTAGGCAGACTTGGAGCTCTCTGTGAGCAGCTCAAAGAACTAAACTCTCAAGGGTATGAAGTTATATTGGTGACTTCAGGTGCTGTNGGTCTTGGCCGGCAAAGACTTAGATATCGCAGATTGGCCAACAGCAGCTTTGCTGATCTTCAAAAGCCACAAACTGAGTTTGATGGAAAAGCATGTGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTTAGCCAGGTGGTCTCCAAAACTAAGTTTCTTATTATTCATGTTTTCCTCCNCCATATTGATGATGCTGATACGAGGTTACTTTTCCCGGTGCAGCTCGATGTGACTTCTTCCCAGCTTCTTGTGAATGATGGGTTCTTTAAGGATGCAGGTTTCAGAAAACAACTGTCTGACACAGTGAACTCACTATTAGATTTAAGGGTCATCCCCATTTTCAATGAAAATGATGCTGTTAGTACTAGGAAGGCACCATATGAGGATTCTTCTGGTATCTTTTGGGACAATGACAGTTTGGCTGGTCTATTAGCACTTGAGCTTAAAGCNGACCTCCTTGTTTTGTTGAGTGATGTTGAGGGCCTTTATAGTGGTCCTCCAACTGACCCAAGCTCAAAGCTAATCCATACGTATATAAAAGAGAAACATCAAGGGGAAATCACTTTTGGAGACAAGTCAAGGTTGGGCAGAGGGGGTATGACTGCTAAAGTTAATGCTGCTGTTTGTGCTGCTTATGCTGGCATCCCGGTTGTTATCACTAGTGGCTATGCTACAGACAACATCATACGAGTGCTTCAAGGGGAAAGAATTGGCACTGTCTTTCATAAAGATGCACATTTGTGGATCAACATTAAGGAAGCCCTACAATCTGAAGAAAGGAGGAAAATATTGCTGGCAGTGGCTGATGCATTGGAGAAAAACCAANATATGATAAGGCTTGAGAATGAGGCTGATGTAGCTGATGCTGAGTTAGCTGGTTATGAGAATCTTGCAAAGTCTGTGCGCATGTTGGCAGATATGGACGAACCAGTTGGTCAGATTTTAAAGAGAACTGAGCTAGCAGATAAACTCATCCTGGAGAAAATATCATGTCCTCTGGGTGTCCTCCTGGTTATATTTGAGTCTCGACCCGATGCCCTTGTTCAGATAGCAGCATTGGCAATTCGAAGTGGAAATGGTTTATTGCTCAAAGGAGGAAAGGAAGCCCGAAGATCAAATGCAGCCTTACACAAGGTCATTACTTCAGNAATACCAGAAACTGTTGGTGACAAACTCATTGGGCTTGTGACTTCAAGAGATGAAATTCCAGATCTACTCAAGCTTGATGATGTGATAGATCTTGTGGTCCCTAGAGGCAGTAATAAGCTTGTTTCTCAAATCAAGGAGTCAACAAAAATTCCTGTTCTTGGTCATGCTGATGGAATTTGTCATGTATATGTTGACAAGTCTGCTAACATTGATATGGCAAAGCAGATAGTTAGGGATGCAAAGACTGATTACCCTGCAGCCTGCAATGCAATGGAAACTCTTCTTGTACACAAGGATCTGTCATGTAATGGTGGACTTAATGATCTGGTCCTTGAACTCCAACGTGAAGGTGTTCAACTGTATGGTGGACCAAGAGCCAGTGCCTTACTAAATGTTTCTGAAATGAGCTCTTTTCATCATGAGTACAGCTCACTTGCTTGCACAGTTGAAATTGTAGAGGACGTTTTTGCTGCCATTGACCACATACACAAACATGGAAGGCATGTTGGGGAAGACCCTGAACTGGCTGAGACTTTCTTAAGTCAAGTTGACAGTGCTGCTGTATTCCACAATGCAAGTACACGGTTTTCTGATGGAGCACGCTTTGGGCTTGGGGCAGAGGTTGGAATAAGTACAAGTCGAATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTATTGACAAACAGATGGATATTGAGGGGAAGTGGGCATGTGGTAGATGGTGATCGAGGGGTCAATTATACTCACAAAGAACTGCCACTAAAAGCATAAGCATGCAGAAAAATTAGATCAAGCTAATATGCTCTCACCTCATCAAAGCGGCACCTCTTTTCTCTGTTCTATTTTGATAAGCAGCAGAAGTTCCTGAGATGATGCTGGCTATATATAATCGTCATTACTATCATTTACCCCTTTCCAGAGCCTTTTTCTTACCTGGAGCAAGTTCAAAGGGGGAGAAAATAATAAATTAATAATCATATCCATATGAATGTTATTATATGACTATGCACTTTACTTTGTTAGTCTTTCATATAACATATTCCGAGATTGTAAAACAGCAATGCTGTGACAGTTNTAAATATATATTCCCTGCATCCTTATGAAGAGATGAATAATCATGAAGGAGTTATTCTCCCAGCTATTATTGTAGAGACTTGAATTTTGTTTTATGCAGAATCATGACCTTGATCTGCAGAGTTTTGGTGTCAAATAAGGATATCAGCGATGGCAGTATCCATGGTTTAGACTGAGTCACTGAATTATATACTCCATATCCACTACTGAATATGTGTGCAGTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02430	12663	21448	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12657	ALDH18A1, P5CS	EC:2.7.2.11 1.2.1.41	Biosynthesis of amino acids	map01230
			Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0006561 proline biosynthetic process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0004349 glutamate 5-kinase activity

GO:0004350 glutamate-5-semialdehyde dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002430s00039737.1	PF00696.23	AA_kinase	7	279	3.70E-26
Glyur002430s00039737.1	PF00171.17	Aldedh	312	540	2.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.486
SRR1783600	control	53.454
SRR1783602	moderate drought stress	91.963
SRR1811619	moderate drought stress	91.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	84.288
DRR006520	Root Summer glycyrrhizin high producing strain	83.381
DRR006521	Root Winter glycyrrhizin high producing strain	397.818
DRR006522	Root Winter glycyrrhizin high producing strain	388.838
DRR006523	Root Summer glycyrrhizin low producing strain	58.744
DRR006524	Root Summer glycyrrhizin low producing strain	59.095
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.345
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.823

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.628
SRR2868004	Drought Stress (root)	20.333
SRR2967015	Control (root)	23.470

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.651
SRR9715740	Leaf	48.973
SRR9715741	Leaf	20.728
SRR9715739	Root	53.330
SRR9715742	Root	234.039
SRR9715743	Root	203.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.242
SRR8749028	MeJA induced 9h	60.514
SRR8749029	MeJA induced 9h	12.705
SRR8749030	Uninduced	6.528
SRR8749031	Uninduced	1.009
SRR8749032	Uninduced	2.517

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	145.246
SRR8400027	Control - Root	71.737