Gene detail information of Glyur002428s00045956 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27280.1 | 1.00E-24 | Calcium-binding EF-hand family protein |
| NR | XP_004487642.1 | 2.08E-45 | PREDICTED: calcium-binding protein PBP1-like [Cicer arietinum] |
| Swissprot | tr|Q9LSQ6|PBP1_ARATH | 8.00E-30 | Calcium-binding protein PBP1 |
| trEMBL | tr|V7ALP5|V7ALP5_PHAVU | 1.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:ESW05071.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02428 | 25519 | 28268 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002428s00045956.1 | PF13833.1 | EF-hand_8 | 26 | 77 | 6.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.746 |
| SRR1783600 | control | 5.484 |
| SRR1783602 | moderate drought stress | 3.911 |
| SRR1811619 | moderate drought stress | 3.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.522 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.986 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.735 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.782 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.580 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.779 |
| SRR2868004 | Drought Stress (root) | 5.161 |
| SRR2967015 | Control (root) | 6.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.214 |
| SRR9715740 | Leaf | 26.009 |
| SRR9715741 | Leaf | 8.559 |
| SRR9715739 | Root | 8.855 |
| SRR9715742 | Root | 8.415 |
| SRR9715743 | Root | 7.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.650 |
| SRR8400027 | Control - Root | 2.431 |