Gene detail

Gene detail information of Glyur002426s00035842

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34960.1	2.00E-67	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
NR	AFK34728.1	3.64E-97	unknown [Lotus japonicus]
COG	YP_005366669.1	5.00E-49	peptidyl-prolyl cis-trans isomerase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|O49605\|CP21A_ARATH	7.00E-89	Peptidyl-prolyl cis-trans isomerase CYP21-1 (Precursor)
trEMBL	tr\|I3S386\|I3S386_LOTJA	1.00E-97	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU000493}

Sequence

Transcript Sequence

>Glyur002426s00035842.1
ATGAGGCTGAGGAGAAAACAGAAGAGGAGCCCGAAATTACACANTTTAACTTTTACCAGTTGCTACTATTCAAACCAATTTGACTTACTGAGTACGTTTGTTAGAAAGAGAATGTGGAAAGATATAAGCAACAGTTTATGCTCATTTAGCACAAAAAATGCTATTTTTCCTGTCATGTTTACTTNTAATAAGCTGCAGTATGCAATAACTTCTGCAGGTAGGATCGTGATCGGATTATATGGCCAAGTGGTACCGAAAACTGTGGGTATGACATTGATTTTCTGTTTTCTGATTTGCATATGTTTGCATATTCTAAAGTGGCTGAGTGTTCCATATTGTGTAGGGGAGAAAGGCAAGAGCNAAGGTGGCGTAAAACTTTATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTCNTGATTCAGGGTGGAGATATTGTTCATCATGATGGCAAAGCATCTGAATCTATTTATGGTGGCACCTTCCCTGATGAGAATTTCAGGATTAAACATTCTCATGCAGGCGTTGTCTCGATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTTCATTACCACAGTGAAGGCCAGTTGGTTGGATGGNGACCATGTTGTCTTTGGCAAGGTTGTTCAAGGCATGGATATTGTGTTTGCTATTGAAGGGGGAGCCGGAACCTACAGCGGAAAACCCAGGAAGAAGGTAGTGATTGCAGACTCTGGAGAGATACCGAAGAGCCGGTGGGATGAGGAAAGTTGAACTTCCTCGTTTTTGTTGACTGACAATTAGCATGCTTGGGTTATAGTTTGCTCATCCCAAACACCTGTTTGAGTTGGGCAAACTGAGTTATGTTTGCCAAAACCATGATTTGGTTGGATTGTGTCTGAACACGATTTTGGGTCTCAAATCATTATTTGATTAGAAGTGAATAGAGTTCCTTTTCTCAAATCATGGTTTACTAAATATAATCCAAACATGCTACAACGTGACCAAAAAATTTGCTAGACTGTTGCTGAAAGTAGGCACAAGTTGGGTATTTTTTTTTACAGATTTAGTTTCTTTAAAGTAAGGAGGAGTGCATTTTATAAGGTAAAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02426	27026	28987	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002426s00035842.1	PF00160.16	Pro_isomerase	70	243	8.30E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.014
SRR1783600	control	4.951
SRR1783602	moderate drought stress	4.642
SRR1811619	moderate drought stress	4.470

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.250
DRR006520	Root Summer glycyrrhizin high producing strain	14.595
DRR006521	Root Winter glycyrrhizin high producing strain	15.327
DRR006522	Root Winter glycyrrhizin high producing strain	14.758
DRR006523	Root Summer glycyrrhizin low producing strain	15.206
DRR006524	Root Summer glycyrrhizin low producing strain	15.059
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.061
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.989

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.145
SRR2868004	Drought Stress (root)	21.839
SRR2967015	Control (root)	21.511

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.724
SRR9715740	Leaf	12.746
SRR9715741	Leaf	14.661
SRR9715739	Root	7.069
SRR9715742	Root	9.490
SRR9715743	Root	8.654

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.448
SRR8749028	MeJA induced 9h	25.654
SRR8749029	MeJA induced 9h	22.003
SRR8749030	Uninduced	10.293
SRR8749031	Uninduced	5.816
SRR8749032	Uninduced	10.250

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.479
SRR8400027	Control - Root	26.438