Gene detail information of Glyur002419s00040890 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13210.1 | 7.00E-162 | Uncharacterised conserved protein UCP015417, vWA |
| NR | AES97085.2 | 0 | plant/T31B5-30 protein [Medicago truncatula] |
| COG | YP_005096143.1 | 1.00E-54 | hypothetical protein Marpi_0401 [Marinitoga piezophila KA3] |
| trEMBL | tr|G7JY31|G7JY31_MEDTR | 0 | Plant/T31B5-30 protein {ECO:0000313|EMBL:AES97085.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02419 | 33639 | 39114 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002419s00040890.1 | PF11443.3 | DUF2828 | 69 | 630 | 9.30E-202 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.088 |
| SRR1783600 | control | 4.004 |
| SRR1783602 | moderate drought stress | 3.070 |
| SRR1811619 | moderate drought stress | 3.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.147 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.199 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.419 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.333 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.220 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.863 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.876 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.660 |
| SRR2868004 | Drought Stress (root) | 15.544 |
| SRR2967015 | Control (root) | 6.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.072 |
| SRR9715740 | Leaf | 1.146 |
| SRR9715741 | Leaf | 1.620 |
| SRR9715739 | Root | 3.236 |
| SRR9715742 | Root | 39.269 |
| SRR9715743 | Root | 32.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.635 |
| SRR8749028 | MeJA induced 9h | 28.762 |
| SRR8749029 | MeJA induced 9h | 30.611 |
| SRR8749030 | Uninduced | 1.936 |
| SRR8749031 | Uninduced | 25.078 |
| SRR8749032 | Uninduced | 39.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.206 |
| SRR8400027 | Control - Root | 1.459 |