Gene detail information of Glyur002419s00040887 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13210.1 | 0 | Uncharacterised conserved protein UCP015417, vWA |
| NR | AES97085.2 | 0 | plant/T31B5-30 protein [Medicago truncatula] |
| COG | YP_005096143.1 | 2.00E-55 | hypothetical protein Marpi_0401 [Marinitoga piezophila KA3] |
| trEMBL | tr|G7JY31|G7JY31_MEDTR | 0 | Plant/T31B5-30 protein {ECO:0000313|EMBL:AES97085.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02419 | 178 | 2169 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002419s00040887.1 | PF11443.3 | DUF2828 | 67 | 651 | 2.30E-216 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.129 |
| SRR1783600 | control | 6.496 |
| SRR1783602 | moderate drought stress | 5.095 |
| SRR1811619 | moderate drought stress | 4.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.024 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.556 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.331 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.436 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.530 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.720 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.664 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.876 |
| SRR2868004 | Drought Stress (root) | 40.314 |
| SRR2967015 | Control (root) | 14.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.613 |
| SRR9715740 | Leaf | 1.955 |
| SRR9715741 | Leaf | 1.945 |
| SRR9715739 | Root | 4.950 |
| SRR9715742 | Root | 39.510 |
| SRR9715743 | Root | 29.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.354 |
| SRR8749028 | MeJA induced 9h | 79.070 |
| SRR8749029 | MeJA induced 9h | 92.203 |
| SRR8749030 | Uninduced | 7.966 |
| SRR8749031 | Uninduced | 79.482 |
| SRR8749032 | Uninduced | 98.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.682 |
| SRR8400027 | Control - Root | 2.167 |