Gene detail

Gene detail information of Glyur002418s00033277

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79460.1	0	Terpenoid cyclases/Protein prenyltransferases superfamily protein
NR	XP_004488548.1	0	PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Cicer arietinum]
COG	NP_217894.1	4.00E-15	Halimadienyl diphosphate synthase [Mycobacterium tuberculosis H37Rv]
Swissprot	tr\|Q39548\|KSB_CUCMA	0	Ent-kaur-16-ene synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A072VJA0\|A0A072VJA0_MEDTR	0	Ent-kaurene synthase {ECO:0000313\|EMBL:KEH38225.1}

Sequence

Transcript Sequence

>Glyur002418s00033277.1
GCATATCTCTTTATAATACTTCCTCGAAGGTCTGATAGGTTTTCCTTGTTAACAGATTCTTCGATGATTGCATCAAATGCAATGAAGAAAATTAACAGTACAGCTTTGTGCCTTGGAGACACTAAGGAAAGAATCAAGAACATGTTCAACAAGGTTGAACTTTGTATTTCTTCATATGATACAGCTTGGGTGGCAATGATTCCTTCTCCAACTTCTCCTCATGCCCCATTCTTCCCTCAATGCTTAAATTGGTTGCTGGATAATCAACTCTTGGATGGCTCCTGGGGTCTTCCCGGTCGCCATCCATCATTGATGAATGATGCTCTCTTATCTACCTTAGCATGTATCCTTGCATTAAAGCGATGGGGTATCGGTGAAGATCAAATGAACAAGGGACTTCAATTTATTGATTCAAACATTACTTCAATCGACGACGAGAAGCAACACCTTCCAATAGGATTTGATATACTTTTTCCTTCTTTGATTGAATATGCACAACTTTTGGGCATTAATCTTCCAGTTGAAGCTACAAGCTTGGAAGCAATGATCCAGAAGAGAAAGCTAGAGCTCCAAAGTGGAAATCAAACCAATTCTGAAGGGTGGAGAGAATATCTAGCATATGTTTCAGAAGGAATGTTGAAGTCACAGGACTGGAATANAATCATGAAGTATCAAAGAAAGAATGGATCTTTGTTCAATTCACCTGCTACAACAGCAGCTGCTTTTCAGCACCTTAAGAATGCTGACTGTCTTAATTACCTTCNATCGGTATTAGAAAAGTTCGGGAATGCAGTTCCAACAGTTTATCCTCTGGATATATATGCCCGTCTCTATATGATTGATAGTCTTGAAAGATTGGGTATTAATCATCATTTCAAAGAGGAAATTCAAAGTGTATTGGATGAAACATACAGATATTGGCTGCAAGGAGTAGAAGATATATTCTTAGACCCCACCACCTGTGCAATGGCATTTCGAATGTTGCGTCTCAATGGCTACGATGTATCTTCAGATCCATTTTATCAATATTCTGAAGATAAATTTGCCAATTCCTTGAAAGGGTACTTGAAGGATGTTGGTGCTGTTTTAGAGCTATATAGGGCTTCACAAGTCATTATACATCCGGATGAATCAATTTTGGTAAGACAAAGTTCCTGGACAAGACATCTTCTGAAGCAGGATTCTTCCCCATACCAGTTATATGCTGATAAACTTCGTTGTTATGTTGATAATGAGGTCAATGATGTTCTTAATTTTCCCCATCATGCGAATTTGGAGCGTTTGTTAAACAGGAGATCAATAGAGCACTACAATGTAGAAGAAACAAGGATTTTAAAAACATCATACAGATCTTGCAATCTTGCAAACCAAGAAATACTGAAGCTAGCAGTAGAAGACTTCAATATCTGCCAATCAATACACATTGAAGAGTTGAAACAACTTGCAAGGTGGGTTGTTGAGAGCAGACTAGACAAACTAGAATTTGCAAGGCAGAAATTAGCATACTGTTTCTTCTCCAGTGCAGCTACTCTTTTTCCTCCCGAACTTTCCGATGCTCGCATATCGTGGGCGAAGAATGGGGTGCTCACAACAGTTGTTGATGATTTCTTTGATGTTGGGAGTTCACAAGAGGAGCAAGTGAACCTTATTCAACTAGTTGAGGAGTGGGATGTAGATGTCAACTCTGCTAGTTGTTCTGAGGCAGTCAAGATAATATTTTCCGCTGTTCGCAGCACAATTTGTGAGATTGGAGAGAGATCAGTCGAGCGGCAAGGACGGAATGTGAAAGACAATGTCATCAAGATTTGGTTAAATTTGATGCGGTCCATGTATACAGAAGCTGAGTGGTTGAGAACCAAGACCATCCCAACAATTGATGATTATATGGAAAATGCATACGTATCATTTGCCTTAGGACCAATTGTTCTTCCAGCCCTCTATCTTGTTGGACCTAAGCTTTCAGATGAAAGAGAATCCGAGGAAGGGAAATTGAATGCAGTGAGTTTGCATATTGCTCATGGTAATGGAGTTGTTACTGCAGAACACGCCATTGGTGAGATGAAGGGTATTGCTGAGGATAAGAGAAGAGAACTCCTGAGACTAATTTTGCAGGAAAAAGGGAGCATAGTTCCAAGAGATTGCAAGGATTTGTTCTGGAAAATGATCAAAGTGTTGCACNTATTTTACATGAAGGACGATGGATTTACTTCACATGAGATGCACTCTACTGTAAATGCAGTACTTAAAGAACCAATTGTCCTTGATGAATTGTTGGTAGATTCTCAGCAAAACCTTACTCCTCTGTCAAAGCCACAAGTNGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02418	23358	27971	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04121	E4.2.3.19	EC:4.2.3.19	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0000287 magnesium ion binding

GO:0010333 terpene synthase activity

GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002418s00033277.1	PF01397.16	Terpene_synth	218	396	2.60E-41
Glyur002418s00033277.1	PF03936.11	Terpene_synth_C	460	651	1.00E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.813
SRR1783600	control	1.846
SRR1783602	moderate drought stress	1.468
SRR1811619	moderate drought stress	1.552

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.449
DRR006520	Root Summer glycyrrhizin high producing strain	2.576
DRR006521	Root Winter glycyrrhizin high producing strain	0.304
DRR006522	Root Winter glycyrrhizin high producing strain	0.213
DRR006523	Root Summer glycyrrhizin low producing strain	1.673
DRR006524	Root Summer glycyrrhizin low producing strain	1.706
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.214
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.286

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.577
SRR2868004	Drought Stress (root)	5.138
SRR2967015	Control (root)	4.212

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.173
SRR9715740	Leaf	0.054
SRR9715741	Leaf	0.170
SRR9715739	Root	0.488
SRR9715742	Root	1.132
SRR9715743	Root	0.895

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.619
SRR8749028	MeJA induced 9h	5.198
SRR8749029	MeJA induced 9h	2.678
SRR8749030	Uninduced	2.208
SRR8749031	Uninduced	0.244
SRR8749032	Uninduced	0.613

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.996
SRR8400027	Control - Root	8.922