Gene detail

Gene detail information of Glyur002418s00033274.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79440.1	5.00E-180	aldehyde dehydrogenase 5F1
NR	XP_004488550.1	0	PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial-like [Cicer arietinum]
COG	YP_004985500.1	4.00E-164	succinate-semialdehyde dehydrogenase [Azospirillum brasilense Sp245]
Swissprot	tr\|Q9SAK4\|SSDH_ARATH	0	Succinate-semialdehyde dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|I1KTW3\|I1KTW3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G17450.1}

Sequence

Transcript Sequence

>Glyur002418s00033274.1
AATTTGACTATTTCCTAGTTTATTTTCATCAAACAAAACAAGCAACTAAAATCAAGGAGATATTACTACTACACTTGAGGAAGTGACACCACTGCACTGGATGGCAGCATTGAAGGTTGGCAACATGAACACGATGGCACTGCGATCCTCCAAGCTTCTCCTCTCTCGCTCTTCCCATTTCCTCTCCGCTAAGTTGCACATGCAAATTCCCCTCACTCGCAAGATGAGCATGGACGCACAGAGTATTGCCTCCCAGCTTAACAGTTCTGGGCTGTTGAGGACTCAGGGCCTTATTGGAGGGAAATGGAGTGATGCTTATGATGGGAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATAGCAGATGTTGCATGCATGGGTGGAAGAGAAACAAATGATGCAATTTCCTCTGCCTATGATGCTTATAGATCATGGAGCAAAATCACTGCTGCTGAGCGAAGCAAATTTCTGAGGAAATGGTATGATTTACTAATGGAACATAAAGAAGAGCTAGCACAACTTATAACCTTGGAGCAAGGGAAACCTTTTAAAGAGTCTATGGGCGAGATAAACTATGGGGCTGGCTTTATTGAGTTTGCATCTGAGGAGGCAAAACCCCTTGCATGTGGCTGTACAGTAGTCATAAAGCCCTCTGAACTTACGCCACTGACTGCTTTAGCTGCAGCAGAACTCTCTATTCAAGCTGGAATACCAGCGGGTGTTGTGAACGTGGTTATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCGAGACCACAGGTAAGGAAGATCACATTCACCGGNTCGACGGCTGTTGGAAAGAAGCTGATGGCGGGTTCTGCTGAGACAGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCGTGCATAGTTTTTGACGATGCTGATCTGGATGTTGCAATAAAAGGAACGATTGCAGCAAAGTTCCGCAACAGTGGACAAACATGTGTTTGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGAGAAATTTGCAAATGCGTTGCTTGATGCTGTTCAGAGTATGAAAGTTGGAGATGGTTTTAGTGAAGGTGTGGTTCAGGGCCCTCTGATCAATGAAGCTGCTGTCAAAAAGGTCGATTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATCAACTTTTTATGAACCAACCATCGTCAGTGATGTCAACAATGAAATGCGCATATCAAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACCGAAGAGGATGCTATCAGAATCGCTAACGACACTAACGCAGGTTTGGGTTCATACGTATTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTTGAATATGGACTTGTGGGTGTTAATGAAGGAGTAATTTCAACAGAGGTGGCTCCTTTTGGTGATCAAGTATGTTTGCTTGGGAAACATGAACAAAGATTGAAGAATGAGGTATATAAATGAGGCAGTGCTAAGCTTATGAAGTGTTCAACTGTTGATCAAATGTATTTGGAGTTTCTGGAAGAGGGAGGGGTTACCTTGTGTTTATCTACTGCATAAGATTCATGTAGCTGCACCCTTTTGTGTACAAATAAGTGCAAGCTTGCAAAGGACTAGCTCAATTTTCTGTTTCATTCTTTTTCCCTTTTTTCTTTTCTTTTTCATTTCCTTCTTTTTAAGGTCNTTTAGGTAGTATAGTATTTGGTAGATAAATTAGAACAGGACAGAATAAAACATATGGGTTCTGTTCTATGTTTGCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02418	2210	13682	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17761	SSADH	EC:1.2.1.24	Butanoate metabolism	map00650
			Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002418s00033274.1	PF00171.17	Aldedh	70	173	3.40E-23
Glyur002418s00033274.1	PF00171.17	Aldedh	174	458	1.00E-107

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.891
SRR1783600	control	8.857
SRR1783602	moderate drought stress	10.915
SRR1811619	moderate drought stress	10.853

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.033
DRR006520	Root Summer glycyrrhizin high producing strain	21.497
DRR006521	Root Winter glycyrrhizin high producing strain	14.758
DRR006522	Root Winter glycyrrhizin high producing strain	13.818
DRR006523	Root Summer glycyrrhizin low producing strain	19.231
DRR006524	Root Summer glycyrrhizin low producing strain	19.928
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.584
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.411

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.304
SRR2868004	Drought Stress (root)	27.617
SRR2967015	Control (root)	27.097

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.038
SRR9715740	Leaf	16.511
SRR9715741	Leaf	15.436
SRR9715739	Root	6.642
SRR9715742	Root	16.413
SRR9715743	Root	13.104

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.071
SRR8749028	MeJA induced 9h	15.664
SRR8749029	MeJA induced 9h	14.393
SRR8749030	Uninduced	4.450
SRR8749031	Uninduced	1.177
SRR8749032	Uninduced	3.120

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.840
SRR8400027	Control - Root	31.075