Gene detail

Gene detail information of Glyur002413s00035796.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26140.1	3.00E-80	FTSH protease 4
NR	XP_009400539.1	6.02E-94	PREDICTED: ATP-dependent zinc metalloprotease FTSH 5, mitochondrial-like isoform X2 [Musa acuminata subsp. malaccensis]
COG	YP_004534092.1	2.00E-51	cell division protease FtsH [Novosphingobium sp. PP1Y]
Swissprot	tr\|Q8LQJ8\|FTSH5_ORYSJ	3.00E-94	ATP-dependent zinc metalloprotease FTSH 5, mitochondrial (Precursor)
trEMBL	tr\|M0RX76\|M0RX76_MUSAM	4.00E-94	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P05180_001}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02413	38481	40955	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08955	YME1	EC:3.4.24.-	Mitophagy - yeast	map04139

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002413s00035796.1	PF00004.24	AAA	152	181	2.20E-06
Glyur002413s00035796.1	PF00004.24	AAA	183	252	1.00E-17

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.022
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.023
SRR1811619	moderate drought stress	0.000

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.134
DRR006520	Root Summer glycyrrhizin high producing strain	0.132
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.063

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.262
SRR2868004	Drought Stress (root)	0.146
SRR2967015	Control (root)	0.103

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.082
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.126
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.181
SRR8749028	MeJA induced 9h	0.068
SRR8749029	MeJA induced 9h	0.066
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.045

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.190
SRR8400027	Control - Root	0.538