Gene detail information of Glyur002413s00035791 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63880.1 | 6.00E-19 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | XP_003620321.1 | 2.51E-39 | Resistance protein [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 6.00E-20 | TMV resistance protein N |
| trEMBL | tr|A0A072UBP0|A0A072UBP0_MEDTR | 8.00E-39 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:KEH26861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02413 | 950 | 1228 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002413s00035791.1 | PF01582.15 | TIR | 1 | 79 | 4.50E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.611 |
| SRR1783600 | control | 8.090 |
| SRR1783602 | moderate drought stress | 8.188 |
| SRR1811619 | moderate drought stress | 6.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.070 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.199 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.184 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.329 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.248 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.923 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.029 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.908 |
| SRR2868004 | Drought Stress (root) | 16.938 |
| SRR2967015 | Control (root) | 20.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.239 |
| SRR9715740 | Leaf | 0.113 |
| SRR9715741 | Leaf | 0.310 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.665 |
| SRR9715743 | Root | 0.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.785 |
| SRR8749028 | MeJA induced 9h | 4.794 |
| SRR8749029 | MeJA induced 9h | 1.557 |
| SRR8749030 | Uninduced | 0.530 |
| SRR8749031 | Uninduced | 1.430 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.039 |
| SRR8400027 | Control - Root | 4.672 |