Gene detail

Gene detail information of Glyur002408s00032640

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38280.1	3.00E-76	PR5-like receptor kinase
NR	XP_003607182.1	0	Kinase R-like protein [Medicago truncatula]
COG	YP_001958461.1	5.00E-22	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	3.00E-80	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|G7JMD6\|G7JMD6_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES89379.1}

Sequence

Transcript Sequence

>Glyur002408s00032640.1
ATGTACTTTAACTATGGCGAGATTCCCGGTCACGCCGACGCCGTTATAGCCGTTAATTCCTCCACCTTCCGTTACATCGCCACCGGAGTCGATCCTAACAATTGCTCGTTCATCGATTATTCCCTTTCTATGCCGCACGAAAACGTCTCCTTCTTTGACGAATATGCATATGATGATTATGTAGATATATTTTTAACCGTTGTGAGATGCGAAAAGCCAGTAGTAAATGTGGACGGCTACATGGACATCGACTCAGGGCACTGTGGAAATAATGGAATTAAGGAAAAGCAGCAGCAGCACTATTCTTATTCGTATGCTTTGCCTGGTTTCGGAGATAAAGAAGCCAGGGACATAGCGGAGTCTTGCAGCATAGAGATGAAGGTAATGATGGGTACGCGGCGGGGAGCGGTGAGATGCGGTGGGAACTGTTCGTATCCTCAGATTCACAGTGAGCGTGTGAATGGGATTGAGCTTCGGTGGCGACCAACGCGCTGTCGTCAAGACGGTGAACCGAATCTGGAAGAGGAACAATTGCCTACACTCCGCTGCATCCTGGACATAGCAGAGTCTTGCAGCATAGAGATGAAGGTAATGATGGGTACGCGGCGCGGAGCGGTGAGATGTGGTGGGAACTGTTCGTATCCTGAGATTCACAGTGAGCGTGTGAATGGGATTGAGCTTCGGTGGCGACCAACGCGCTGTCGTCAAGACGGTGAACCGAATCTGGAACAGGAACAATTGCCTGCACTCCGCTGCATCCTGATTGATGCATCAGCCACTTTCCTTGGAATCGGATTCATTCTGTTGCCGTGGGTTCTCGCAAAATTTGTTCTTGGGGCACCNTTCGTGGTTGCCGTCTTGATATGTAAATGGAGAAAAAGGCATTTATCGGAATATGACACGGTTGAANATTTTATCCAGAGTAACAACAACTTCATGCCCATCAGGTACTCCTACTCTCAAATCAAAAGGATGACCAAAGGGTTCAAGGATAAGTTGGGTGAAGGGGGCTATGGCTCTGTNTANAAAGGGGAGCTTCGAAGCAAGCGTGAAGTAGCTGTCAAGGTATTGACCAAGTCCCAAACCAATGGACAGGATTTCATCAATGAAGTTGCAACCATTGGAAGAATTCGTCATGTCAATGTGGTGCAGCTAATTGGGTTTTGTGCCGAAAGAACAAAGCANGCTCTGGTCTANGAGTTCATGCCCAATGGNTCTCTTGANANACACACGTTTTCNCAAGAGCAAGGAAACTCATCANTGAGCTNCGAGAAGATCCATGACATCTCTCTTGGAATTGCTCGTGGGATTCAATACATACACCAAGGCTGTGACATGCAAATCATACACTTTGATATCAAACCACACAACATTCTTCTCGATGAGAATTTCAGCCCAAAGATATCAGANTTTGGACTGGCCAAGTTGTACCGAATANATCAGAGTATTTTATCTCTAACAGTTGTAAGAGGAACAGTGGGGTACATGGCTCCTGNGTTGTTGTACAAAAACATTGGGGGAATCTCTCACAAGGCTGATGTTTTCAGTTTTGGGATGATGCTGATGGAGATGGCAGGTAGAAGAAAGAACAAGAATTACATTGAGAATTCTCAGCAAGAGTACTATGCTAAATGGGTTTATGATCAATTTGAGGAAACAATAGATACCAACAGTAGTGACACAGAGGAGGAAAAGAAAACTGCAATGAAGATGATTGGGATCGCCTTAAGATGCATACAAATGAAACCGAGTGATCGACCCTCAATGAACGAAGTGATCGACCCTCAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02408	27935	30423	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002408s00032640.1	PF00069.20	Pkinase	330	593	5.90E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.344
SRR1783600	control	1.403
SRR1783602	moderate drought stress	1.197
SRR1811619	moderate drought stress	1.255

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.713
DRR006520	Root Summer glycyrrhizin high producing strain	0.656
DRR006521	Root Winter glycyrrhizin high producing strain	0.186
DRR006522	Root Winter glycyrrhizin high producing strain	0.183
DRR006523	Root Summer glycyrrhizin low producing strain	0.677
DRR006524	Root Summer glycyrrhizin low producing strain	0.844
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.910
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.016

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.424
SRR2868004	Drought Stress (root)	1.153
SRR2967015	Control (root)	1.092

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.939
SRR9715740	Leaf	4.207
SRR9715741	Leaf	13.343
SRR9715739	Root	0.251
SRR9715742	Root	3.169
SRR9715743	Root	1.670

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.281
SRR8749028	MeJA induced 9h	0.456
SRR8749029	MeJA induced 9h	0.388
SRR8749030	Uninduced	0.802
SRR8749031	Uninduced	0.182
SRR8749032	Uninduced	0.253

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.689
SRR8400027	Control - Root	0.913